SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39874

Length: 459 nt

UniGene Fasta

>sp_v1.1_unigene39874
TGTATCGACCTTGGCTGTCACTCACAAAATTTTTCGTCGCCAAATCTCTACTTCGCCTCCCAACACTCATATCCACAGGGTAAGACAATTTTATGAAAACCTGGTTCCAAGCAGCACAATCTATGATGTTGAATCTCCAGACCACTCAATTAAGAAGTTTACAAGCGATGGTCAGTATCTTATATGTTTCAGCAGGAGCTACCAGGATTTGATTGTTTACAGGCACCACTGGCTAAGTTTTGGTTGCAAGGGTGAAGATTGTAACTATAATGATCTTCCTCCAAAGGCAAAGAACTTTGACAGCTACTTTTGCCATCTATACTCTCTACCCCTTACTTCTGGTACTGAGTTTATCTGCAAAGATTTCTTCTGTACACTGAAAACAACCAGTTTGGTATAGTTGCTACATCAACTGCACCAGACCAGGATGCACCAGTTTCTGAGGGAGCCATTCAAGGA

Ace file of the UniGene sp_v1.1_unigene39874

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to deetiolated 1-like protein; K10571 de-etiolated-1	-	-	63%
FL-Next	sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	59%
Blast2go	hp2 protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	73%
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9ZNU6

Fln msg: Overlapping hits, possible frame ERROR between 385 and 364, Distance to subject end: 369 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 153 - 523

Fln protein: VSTLAVTHKIFRRQISTSPPNTHIHRVRQFYENLVPSSTIYDVESPDHSIKKFTSDGQYLICFSRSYQDLIVYRHHWLSFGCKGEDCNYNDLPPKAKNFDSYFCHLYSLPLTSGTEFICKxxxxxxxxxQFGIVATSTAPDQDAPVSEGAIQG

Protein Length: 154

Fln nts: TGTATCGACCTTGGCTGTCACTCACAAAATTTTTCGTCGCCAAATCTCTACTTCGCCTCCCAACACTCATATCCACAGGGTAAGACAATTTTATGAAAACCTGGTTCCAAGCAGCACAATCTATGATGTTGAATCTCCAGACCACTCAATTAAGAAGTTTACAAGCGATGGTCAGTATCTTATATGTTTCAGCAGGAGCTACCAGGATTTGATTGTTTACAGGCACCACTGGCTAAGTTTTGGTTGCAAGGGTGAAGATTGTAACTATAATGATCTTCCTCCAAAGGCAAAGAACTTTGACAGCTACTTTTGCCATCTATACTCTCTACCCCTTACTTCTGGTACTGAGTTTATCTGCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTTTGGTATAGTTGCTACATCAACTGCACCAGACCAGGATGCACCAGTTTCTGAGGGAGCCATTCAAGGA

Fln Alignment:

sp_v1.1_unigene39874___VTHKIFRRQISTSPPNTHIHRVRQFYENLVPSSTIYDVESPDHSIKKFTSDGQYLICFSRSYQDLIVYRHHWLSFGCKGEDCNYNDLPPKAKNFDSYFCHLYSLPLTSGTEFICKDxxxxxxxNQFGIVATSTAPDQDAPVSEGAIQG
Q9ZNU6_______________VTARLFERQICTPAPGTSIHRARRFYENVVPSYTIYDVECPDHSFRKFTDDGLYFVSFSRNHQDLVVYRPTWLTFSCKEEDCDTHDLPLKARKFESFFTQLYSVTLASSGELICKDxxxxxxxNQFGLFATSTAQIHDAPPTGGAIQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain