SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39857

Length: 422 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39857
ATGGGCGGCACCACGACGACCAAACCTCCCAGTCGGACGTCAAACACTTGGGACGAGTCTTAGACCCTAAGGCAGCTAGTGCTGTCCACAACTCCATTGTCAGGGATCTGATGATGCTCGAAAATCAAGTGCCGGTATTTTTGTTGCAGAAGCTTTTGGAGCTGCAGTTGGGATCTAGAGCCAAGGCCGAGGAGAGGCTCAGCAGCCTGCTAAAGCTGGTATGTCAAGAGTTATCGCCTTTCAGCTTCGAGTTACCAGAGAATTCAGATCTCTACATAAACGAAGGAGGGCACTTGCTGGAGGTGCTGTACTACGCCATTGTCCCAGTTTTCCACACTCAAAATCCCACGGCAAAAGGAAATGATGTGCCTGCTACAGCAGACATGTCTACCATTAAAAAGGGCTTCAGTTCCTTGTGGAAG

Ace file of the UniGene sp_v1.1_unigene39857 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF247 domain containing protein	-	-	2.0e-10	32%
FL-Next	sp=Putative UPF0481 protein At3g02645; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF247, plant	IPR004158	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0C897

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 140 - 529

Fln protein: GRHHDDQTSQSDVKHLGRVLDPKAASAVHNSIVRDLMMLENQVPVFLLQKLLELQLGSRAKAEERLSSLLKLVCQELSPFSFELPENSDLYINEGGHLLEVLYYAIVPVFHTQNPTAKGNDVPATADMSTIKKGFSSLWK

Protein Length: 141

Fln nts: ATGGGCGGCACCACGACGACCAAACCTCCCAGTCGGACGTCAAACACTTGGGACGAGTCTTAGACCCTAAGGCAGCTAGTGCTGTCCACAACTCCATTGTCAGGGATCTGATGATGCTCGAAAATCAAGTGCCGGTATTTTTGTTGCAGAAGCTTTTGGAGCTGCAGTTGGGATCTAGAGCCAAGGCCGAGGAGAGGCTCAGCAGCCTGCTAAAGCTGGTATGTCAAGAGTTATCGCCTTTCAGCTTCGAGTTACCAGAGAATTCAGATCTCTACATAAACGAAGGAGGGCACTTGCTGGAGGTGCTGTACTACGCCATTGTCCCAGTTTTCCACACTCAAAATCCCACGGCAAAAGGAAATGATGTGCCTGCTACAGCAGACATGTCTACCATTAAAAAGGGCTTCAGTTCCTTGTGGAAG

Fln Alignment:

sp_v1.1_unigene39857___HNSIVRDLMMLENQVPVFXXXXXXXXXLGSRAKAEERLSSLLKLVCQELSPFSFELPENSDL--YINEGGHLLEVLYYAIVP
P0C897_______________HNEILRDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKDLSPLVIKFDDDQILKAQFQECNHILDFLYQMIVP

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
155			33	66	0.997457
156		66		33	0.997457
224	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain