SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39841

Length: 537 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39841
GTTATTTGCGAGCGAGGAAATTTAGAGGGGTGTGGCGTAAAATGGGAGACCACAGTGGTGGAGAGAGCAGTCCTCATTCTGACATAGAGTCTACCGGCATCCACAATAATGGATCTTCTTCTTCCTCACAATCCATCATACGAGAGCAAGACCGGCTGCTTCCCATAGCCAATGTGGGGCGCATCATGAAGAAAACCCTCCCAACCAACGCCAAGATCTCCAAGGAGGCCAAGGAAATCATGCAAGAATGCGTCTCCGAGTTCATTAGCTTTGTTACTGGAGAAGCATCCGACAAGTGTCACAAGGAAAAGCGCAAGACCATCAACGGCGATGACATACTATGGGCCATGACCACTCTCGGATTCGAAGTCTACGCTGAGCCCCTCAAGGTTTATCTGGACAAGTATAGAGAACTGGAGGGCGAGAAACTTTCCATGAGCAAGCAGCTTCAAGTAGATCAACCTCAGCCGGACCTGCAATATCAGGCATGTAATCCTAGTGCCCACAACCGCCCACTGGTCATGACTTACAAGATGC

Ace file of the UniGene sp_v1.1_unigene39841

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ccaat-binding transcription factor subunit A, putative	-	-	3.9937e-43	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	ccaat-binding transcription factor subunit	-	-	4.2039e-45	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	4.2039e-45	83%
Blast2go	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	4.2039e-45	83%
Blast2go	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	4.2039e-45	83%
Blast2go	Histone-fold	IPR009072	-	4.2039e-45	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR95

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 165 - 228

Fln protein: MGDHSGGESSPHSDIESTGIHNNGSSSSSQSIIREQDRLLPIANVGRIMKKTLPTNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKVYLDKYRELEGEKLSMSKQLQVDQPQPDLQYQACNPSAHNRPLVMTYKM

Protein Length: 166

Fln nts: GTTATTTGCGAGCGAGGAAATTTAGAGGGGTGTGGCGTAAA_-_ATGGGAGACCACAGTGGTGGAGAGAGCAGTCCTCATTCTGACATAGAGTCTACCGGCATCCACAATAATGGATCTTCTTCTTCCTCACAATCCATCATACGAGAGCAAGACCGGCTGCTTCCCATAGCCAATGTGGGGCGCATCATGAAGAAAACCCTCCCAACCAACGCCAAGATCTCCAAGGAGGCCAAGGAAATCATGCAAGAATGCGTCTCCGAGTTCATTAGCTTTGTTACTGGAGAAGCATCCGACAAGTGTCACAAGGAAAAGCGCAAGACCATCAACGGCGATGACATACTATGGGCCATGACCACTCTCGGATTCGAAGTCTACGCTGAGCCCCTCAAGGTTTATCTGGACAAGTATAGAGAACTGGAGGGCGAGAAACTTTCCATGAGCAAGCAGCTTCAAGTAGATCAACCTCAGCCGGACCTGCAATATCAGGCATGTAATCCTAGTGCCCACAACCGCCCACTGGTCATGACTTACAAGATGC

Fln Alignment:

sp_v1.1_unigene39841___DHSGGESSPHSDIESTGIHNNGXXXXXXXIIREQDRLLPIANVGRIMKKTLPTNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKVYLDKYRELEGEKLSMSK
A9NR95_______________NYGSPDSSPRSENESGGGHMGGSDFS----VKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKVSMAK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
26	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain