SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39839

Length: 802 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene39839

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine kinase-like protein n=3 Tax=Andropogoneae RepID=B6SUE5_MAIZE	-	-	1.0e-21	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	duf26 domain-containing protein 2	-	-	9.32432e-37	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gnk2-homologous domain	IPR002902	-	9.32432e-37	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLG0

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 267 - 384

Fln protein: VMYDLAKNAAKTGFNTSWHGQNAEEKVYGLVQCRDDTSPQECSSCAQEASITLQQLCENDIGGRVWFDVCFLRYDNFSFFSNLDAHVISILKNPQTVKDNQAGFQNDVMDLLRPLTGENSDLARKGLAAESATSSSSDTHRVFGLVECWRNLPIEKCKSCLLIALKNLYPSMVKEGGEALLGSCRIRFETYPFSSLFVSNPTVHQGKSSRSVAILCGFTGGGLLAFAICLFIFRRRNQMRSATLARPVMITQTQDSARREGGSGSLF

Protein Length: 268

Fln nts: GTTATGTATGATCTGGCTAAAAATGCAGCAAAGACGGGGTTTAACACCTCTTGGCATGGCCAGAACGCAGAAGAGAAGGTGTATGGCCTCGTCCAGTGCAGAGACGACACATCGCCACAAGAATGCTCTAGCTGTGCACAGGAAGCGAGCATCACACTTCAACAGCTTTGCGAGAATGACATAGGCGGCCGAGTGTGGTTCGATGTGTGTTTCTTGCGTTATGATAATTTCAGTTTCTTTTCAAACTTAGATGCCCATGTCATTTCTATTCTCAAAAATCCGCAGACAGTGAAGGACAATCAGGCTGGTTTTCAGAATGACGTCATGGATCTGCTTCGTCCTCTGACTGGTGAAAATTCTGATCTCGCAAGGAAGGGATTAGCTGCAGAATCCGCTACCTCTTCTTCGTCTGATACGCACAGGGTTTTCGGTTTGGTTGAATGCTGGAGAAATTTGCCCATAGAAAAGTGCAAATCATGTTTGTTAATAGCGCTCAAAAACCTCTATCCTTCTATGGTAAAAGAAGGGGGCGAAGCGTTGTTAGGAAGTTGTAGAATTCGGTTTGAGACATACCCTTTCTCGAGTTTATTTGTCAGCAACCCTACAGTGCATCAGGGCAAATCTTCGAGAAGCGTGGCCATACTCTGCGGATTTACTGGAGGCGGATTGCTCGCCTTTGCTATATGCCTGTTTATATTTAGACGGCGAAACCAAATGAGATCTGCGACTCTGGCGAGACCAGTCATGATCACACAAACGCAAGATTCGGCAAGGCGTGAAGGCGGCTCAGGATCATTGTTCA

Fln Alignment:

sp_v1.1_unigene39839___VMYDLAKNAAKTGFNTSWHGQNAEEKVYGLVQC-RDDTSPQECSSCAQEASITLQQLCENDIGGRVWFDVCFLRYDNFSFFSNLDAHVISILKNPQTVKDNQAGFQNDVMDLLRPLTGENSDLARKGLXXXXXXXXXXDTHRVFGLVECWRNLPIEKCKSCLLIALKNLYP-SMVKEGGEALLGSCRIRFETYPFSSLFVSN---------------PTV----------HQGKSSRSVAILCGFTGGGLLAFAICLFIFRRRNQMRSATLARPVMITQTQDSAR
B8LLG0_______________VMGDLVKNAPQTGFNTSFYGESSN-RVYGLLQCIGNNISQKDCSICSQRARDNVRQLCGNDIGGQEWRNNCFLRYENYSFFSKLDTDGDELENANDIVTTNLSNFQTTTSNLLSYLSDQAYYPANKGFAQGTVEDPSVGT--IYGLVQCLRDLSIKDCRSCLQSARNRIYKCCFTQQGAQSLLGSCTVRYEIYPFFNTTEENSSSPPPSSGSSGANPPTVASTNGTSSNSSKDSSTNTVLIILSIIGGLIIALLLCLFAM--MSKLKSA--ISQSLVTHAQNEGR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
61		66	33		0.997471
65	66		33		0.997454
154	66		33		0.997467
186		66	33		0.997453
214			33	66	0.997476
224	66	33			0.997452
360		33		66	0.997452
372		33	66		0.997452
390	66			33	0.997452
392		66		33	0.997452
402		33		66	0.997452
553		33		66	0.997452
594		33		66	0.997452
602		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain