SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39769

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39769
TAAAATGAAAAACTGGGGATGTGTCATTGATGAATATGTGTATGGTAGCCTTCTCCCTGGTTTGTTAAGAACAGGTCAAGTAAGTAAGGCTTTAGAAATGTTGGACAGTATGAGGGATGTAGGTTATTTACCTACTGTTCATATCTATACTGCTCTGATTATTCATTTCTTTAGGGAAAATAAATCAAAGCAAGCCTTATGGTTTCTTGAAGAAATGAAAAAAGCTGGTTGTGAACCAACCGTTGTTACATATACAGCATTAATTAGAGGGTATATGAATGAGGGCCTAATGTCTAATGCTTGGAATACTTTCAATCTCATGAAGGAGAAAGGGCCTGCTCCTGATTTTGAAACTTACTCTACATTCATTCACTGTCTTTGTAGGGCTGGTAAATCAAAAATGGCACTGGAACTACTCTATGAAATGATGGAAATTGGTATTCACCCAGTGCTGTGAACTTCAGGACTGT

Ace file of the UniGene sp_v1.1_unigene39769 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	3.00004e-41	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.15355e-41	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.15355e-41	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 68 aas, your sequence is shorter than subject: 152 - 486

Fln protein: KMKNWGCVIDEYVYGSLLPGLLRTGQVSKALEMLDSMRDVGYLPTVHIYTALIIHFFRENKSKQALWFLEEMKKAGCEPTVVTYTALIRGYMNEGLMSNAWNTFNLMKEKGPAPDFETYSTFIHCLCRAGKSKMALELLYEMMEIGIHPVL*

Protein Length: 153

Fln nts: TAAAATGAAAAACTGGGGATGTGTCATTGATGAATATGTGTATGGTAGCCTTCTCCCTGGTTTGTTAAGAACAGGTCAAGTAAGTAAGGCTTTAGAAATGTTGGACAGTATGAGGGATGTAGGTTATTTACCTACTGTTCATATCTATACTGCTCTGATTATTCATTTCTTTAGGGAAAATAAATCAAAGCAAGCCTTATGGTTTCTTGAAGAAATGAAAAAAGCTGGTTGTGAACCAACCGTTGTTACATATACAGCATTAATTAGAGGGTATATGAATGAGGGCCTAATGTCTAATGCTTGGAATACTTTCAATCTCATGAAGGAGAAAGGGCCTGCTCCTGATTTTGAAACTTACTCTACATTCATTCACTGTCTTTGTAGGGCTGGTAAATCAAAAATGGCACTGGAACTACTCTATGAAATGATGGAAATTGGTATTCACCCAGTGCTGTGAACTTCAGGACTGT

Fln Alignment:

sp_v1.1_unigene39769___KMKNWGCVIDEYVYGSLLPGLLRTGQVSKALEMLDSMRDVGYLPTVHIYTALIIHFFRENKSKQALWFLEEMKKAGCEPTVVTYTALIRGYMNEGLMSNAWNTFNLMKEKGPAPDFETYSTFIHCLCRAGKSKMALELLYEMMEIGIHP
D5AAH0_______________KMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain