SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39763

Length: 257 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene39763
CAATTTAAAGCGCACAAAAGTCCTATTTCTGCATTGTGCTTTGATCCGAGTGGCACACTTTTGGTTACTGCATCTGTTCATGGCCATAACCTTAATGTGTTTCGCATCATGCCATCTCCCTTAGGGAACAGCTCGAGCTCTACCATTTTTAATGTAAATGCATCACATGTACATTTGTACAAGCTACATCGTGGGCTTACTAATGCGGTCATACAGGACATCAGTTTTAGTGATGACAGTCGTTGCATTGCTATCAG

Ace file of the UniGene sp_v1.1_unigene39763

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	74%
Blast2go	breast carcinoma amplified	-	-	3.29377e-28	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to starvation	GO:0042594	Biological Process	3.29377e-28	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	3.29377e-28	83%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	3.29377e-28	83%
Blast2go	WD40 repeat, subgroup	IPR019781	-	3.29377e-28	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9FPJ6

Fln msg: Distance to subject end: 548 aas, your sequence is shorter than subject: 85 - 1004

Fln protein: QFKAHKSPISALCFDPSGTLLVTASVHGHNLNVFRIMPSPLGNSSSSTIFNVNASHVHLYKLHRGLTNAVIQDISFSDDSRCIAI

Protein Length: 86

Fln nts: CAATTTAAAGCGCACAAAAGTCCTATTTCTGCATTGTGCTTTGATCCGAGTGGCACACTTTTGGTTACTGCATCTGTTCATGGCCATAACCTTAATGTGTTTCGCATCATGCCATCTCCCTTAGGGAACAGCTCGAGCTCTACCATTTTTAATGTAAATGCATCACATGTACATTTGTACAAGCTACATCGTGGGCTTACTAATGCGGTCATACAGGACATCAGTTTTAGTGATGACAGTCGTTGCATTGCTATCAG

Fln Alignment:

sp_v1.1_unigene39763___QFKAHKSPISALCFDPSGTLLVTASVHGHNLNVFRIMPSPLGNSSSSTIFNVNASHVHLYKLHRGLTNAVIQDISFSDDSRCIAI
B9FPJ6_______________QFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRYDWTASHVHLYKLYRGMTAAVIQDISFSHFSQWISI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain