SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39756

Length: 532 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene39756
ATGGGAGGTGAATCAGTTTTTGTGGCTGCTCATACGTCGGCTGGTAAAACGGTTGTTGCTGAATATGCTTTTGCATTGGCTGCCAAGCATTGTACACGTGCTGTATACACATCTCCTATAAAGACAATCAGCAACCAGAAGTATCGTGACTTCAGTGATAAGTTTGATGTGGGTCTTCTGACTGGTGATGTGAGTTTGCGACCAGAAGCCTCTTGCCTTATTATGACAACGGAAATCCTAAGGTCAATGCTTTACAAAGGAGCAGACATTATCCGTGATATTGAATGGGTTATATTTGATGAAGTGCACTACGTAAATGATGTTGAGCGAGGAGTTGTTTGGGAGGAGGTTATCATTATGCTTCCAAAACATATCAATATTGTACTCCTTTCTGCAACGGTACCAAACAAGTTAGAGTTTGCAGATTGGATTGGGCGTACAAAGAAGAAGAAGATACATGTTACTGGGACAACCCAAAGGCCTGTTCCTCTTGTGCACTTCCTGTATTATTCAGGAGAGCTCTATGAAATCT

Ace file of the UniGene sp_v1.1_unigene39756

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	protein	-	-	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	0.0	92%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: Distance to subject end: 731 aas, your sequence is shorter than subject: 177 - 884

Fln protein: MGGESVFVAAHTSAGKTVVAEYAFALAAKHCTRAVYTSPIKTISNQKYRDFSDKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIVLLSATVPNKLEFADWIGRTKKKKIHVTGTTQRPVPLVHFLYYSGELYEI

Protein Length: 178

Fln nts: _-_ATGGGAGGTGAATCAGTTTTTGTGGCTGCTCATACGTCGGCTGGTAAAACGGTTGTTGCTGAATATGCTTTTGCATTGGCTGCCAAGCATTGTACACGTGCTGTATACACATCTCCTATAAAGACAATCAGCAACCAGAAGTATCGTGACTTCAGTGATAAGTTTGATGTGGGTCTTCTGACTGGTGATGTGAGTTTGCGACCAGAAGCCTCTTGCCTTATTATGACAACGGAAATCCTAAGGTCAATGCTTTACAAAGGAGCAGACATTATCCGTGATATTGAATGGGTTATATTTGATGAAGTGCACTACGTAAATGATGTTGAGCGAGGAGTTGTTTGGGAGGAGGTTATCATTATGCTTCCAAAACATATCAATATTGTACTCCTTTCTGCAACGGTACCAAACAAGTTAGAGTTTGCAGATTGGATTGGGCGTACAAAGAAGAAGAAGATACATGTTACTGGGACAACCCAAAGGCCTGTTCCTCTTGTGCACTTCCTGTATTATTCAGGAGAGCTCTATGAAATCT

Fln Alignment:

sp_v1.1_unigene39756___RAVYTSPIKTISNQKYRDFSDKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIVLLSATVPNKLEFADWIGRTKKKKIHVTGTTQRPVPLVHFLYYSG
B8LMT3_______________RVIYTSPIKALSNQKFREFSEEFSDVGLMTGDVTIAPNASCLVMTTEILRSMQYKGSEIMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHIIYTDYRPTPLQHYLFPSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain