SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39709

Length: 565 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39709
ATCTATACTGATTGGGTTGAATGATTGTTATCTCTTCTACCTGAATTTAAATCCTAACTAATGACATTGATGAGTTATAATAACTGGATGACGACGGAGAGACGAGTAATGTGGGAGACATTCGATGAGAATGGGACACTGAATTCGAGCGACGAATCGTCGCGCGCCATGTACATCGGGAACAGCGCCTTCGACACCAACATGGTTATTATTGTGATAACGTTGCTCTGCATCCTCATCTGCGCTTTGGGACTCAACTCCATCGTCCGTTGCGCGCTCCGTACCCGCCCGCTGCACGAGTCCGTGGACGATGTGGAGGCTGCGAGGGTGGCCCACACCGGAATGAAGCGGAAGGCTCTCAGGGCGTTGCCGAGGACGGTCTATGGCGCCGCCGGGTGGAAGCTGCCCGACACCGACTGCCCTATCTGCCTGACCGAGTTCGTGGAGGGGGAGGAGGTCAGAGTTTTGCCCAGATGCAATCATGGCTTCCATGTCCGCTGCATTGATACGTGGCTTTCTTCGAATTCCTCCTGCCCGACCTGCAGGCAGAACTTGCTGGAACTCT

Ace file of the UniGene sp_v1.1_unigene39709

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL3C, putative n=1 Tax=Ricinus communis RepID=B9S4E7_RICCO	-	-	4.0e-34	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	ring-h2 finger protein	-	-	1.4013e-45	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.4013e-45	72%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.4013e-45	72%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.4013e-45	72%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYQ0

Fln msg: Distance to subject end: 40 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 168 - 222

Fln protein: MTLMSYNNWMTTERRVMWETFDENGTLNSSDESSRAMYIGNSAFDTNMVIIVITLLCILICALGLNSIVRCALRTRPLHESVDDVEAARVAHTGMKRKALRALPRTVYGAAGWKLPDTDCPICLTEFVEGEEVRVLPRCNHGFHVRCIDTWLSSNSSCPTCRQNLLEL

Protein Length: 169

Fln nts: ATCTATACTGATTGGGTTGAATGATTGTTATCTCTTCTACCTGAATTTAAATCCTAACTA_-_ATGACATTGATGAGTTATAATAACTGGATGACGACGGAGAGACGAGTAATGTGGGAGACATTCGATGAGAATGGGACACTGAATTCGAGCGACGAATCGTCGCGCGCCATGTACATCGGGAACAGCGCCTTCGACACCAACATGGTTATTATTGTGATAACGTTGCTCTGCATCCTCATCTGCGCTTTGGGACTCAACTCCATCGTCCGTTGCGCGCTCCGTACCCGCCCGCTGCACGAGTCCGTGGACGATGTGGAGGCTGCGAGGGTGGCCCACACCGGAATGAAGCGGAAGGCTCTCAGGGCGTTGCCGAGGACGGTCTATGGCGCCGCCGGGTGGAAGCTGCCCGACACCGACTGCCCTATCTGCCTGACCGAGTTCGTGGAGGGGGAGGAGGTCAGAGTTTTGCCCAGATGCAATCATGGCTTCCATGTCCGCTGCATTGATACGTGGCTTTCTTCGAATTCCTCCTGCCCGACCTGCAGGCAGAACTTGCTGGAACTCT

Fln Alignment:

sp_v1.1_unigene39709___WMTTERRVMWET-------FDENGTLNSSDESSRAMYIGNSAFDTNMXXXXXXXXXXXXXXXXXNSIVRCALRTRP----LHESVDDVEAARVAHTGMKRKALRALPRTVYGAAGWKLPDTDCPICLTEFVEGEEVRVLPRCNHGFHVRCIDTWLSSNSSCPTCRQNLLEL
A9NYQ0_______________WTETTRRLLLEPASPSSEGLDASPRQKPAEGSSRGPYMGESSFDTNMVVILAALLCALICALGLNSIVRCALRCSRARAVLFESAEDVEA-RLANTGMKRKALRALPTAVYGAAGSKLPCTDCPICLAEFLEGDEVRILPKCNHGFHMRCIDTWLASHSSCPTCRQNLLEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain