SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39681

Length: 517 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39681
CGTCGTGACCTTGGCTGTCACTCAAGTTTCCATATGGAACAAACATTTCTCAGATCAAAGAAAATTTCACTCACTACAAAGAAATTGAAGAGAGACTTGCCATGAAACCTGGTGCTTCGTTTTCTTCTTCCACTTCTAAATTGGTGCCAATTATAAATCCTCCTGAAGGTATGAAGTTGCCTTTTAATATACTGTTCAAAGTAAATTCACTTGTTCAGCTTGGCATTCTTAATGGGCCAAGCCTTGGTAAGGAATTCTTCAGTTTGCTACAGCCAGTGAAGGGGAGACCTCTTTCCTACATAGATCGGGCTTTATTAAATCTTAGTAATTTGAGGAACCCTAGTTATGATCCAGTAAAATCACTTATGAAGGAATTCAATAATAAAAGATCAAAAAGGTACCACGATTTAGCAGATTTTTCTCTAGACAGTGGTCTGATGTATGTCCGCCGAGTACAAATAACTCCATCCAAAGTGTATTTCTTTGGACCTGAAGTCAATGTCTCCAACCGTGTCAC

Ace file of the UniGene sp_v1.1_unigene39681 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI	-	-	2.0e-35	49%
FL-Next	sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	rna-dependent rna polymerase	-	-	9.20674e-37	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	9.20674e-37	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LQV2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 716 aas, your sequence is shorter than subject: 171 - 1107

Fln protein: S*PWLSLKFPYGTNISQIKENFTHYKEIEERLAMKPGASFSSSTSKLVPIINPPEGMKLPFNILFKVNSLVQLGILNGPSLGKEFFSLLQPVKGRPLSYIDRALLNLSNLRNPSYDPVKSLMKEFNNKRSKRYHDLADFSLDSGLMYVRRVQITPSKVYFFGPEVNVSNRV

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTCCATATGGAACAAACATTTCTCAGATCAAAGAAAATTTCACTCACTACAAAGAAATTGAAGAGAGACTTGCCATGAAACCTGGTGCTTCGTTTTCTTCTTCCACTTCTAAATTGGTGCCAATTATAAATCCTCCTGAAGGTATGAAGTTGCCTTTTAATATACTGTTCAAAGTAAATTCACTTGTTCAGCTTGGCATTCTTAATGGGCCAAGCCTTGGTAAGGAATTCTTCAGTTTGCTACAGCCAGTGAAGGGGAGACCTCTTTCCTACATAGATCGGGCTTTATTAAATCTTAGTAATTTGAGGAACCCTAGTTATGATCCAGTAAAATCACTTATGAAGGAATTCAATAATAAAAGATCAAAAAGGTACCACGATTTAGCAGATTTTTCTCTAGACAGTGGTCTGATGTATGTCCGCCGAGTACAAATAACTCCATCCAAAGTGTATTTCTTTGGACCTGAAGTCAATGTCTCCAACCGTGTCAC

Fln Alignment:

sp_v1.1_unigene39681___LKFPYGTNISQIKENFTHYKEIE-ERLAMKPGASFSSSTSKLVPIINPPEGMKLPFNILFKVNSLVQLGILNGPSLGKEFFSLLQPVKGRPLSYIDRALLNLSNLRNPSYDPVKSLMKEFNNKRSKRYHDLA-DFSLDSGLMYVRRVQITPSKVYFFGPEVNVSNRV
Q9LQV2_______________LELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQ-KKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain