SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39675

Length: 426 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39675
TGTTGAGATAACAGCATTGTCAAGTTATGAAGAGAAAGAAGATCTGTTTAAAGAACAGGTTGCCTTTCTAAGGCAGCGTTTCTTCCACTCCATTGTCCCTGGTGGACTTGCTGGTGACAGAAGAGCAGTTGTTCCTGCATCTGGCTTTCCGTTCAGCATACAACAGATCTGGAAAATTATCAAGAAATAAAGATCTTGACTTGCCCGCTCACAAGGTGATGGTTGCAACTGTTCGTTGCGAAGAGATTGCAAGGAAAAAGTTGATCACTTGACCAATGATGAGGATTGGCGTGAACTGGACAAAGAGGTACAGTCTGGGCCAATTCCAGGGTTTGGGAAGAAGCTGAGTACAATACTGGACACATATTTCTCAAGTTATGATATGGAAGTGGTTTATTTTGAGGAAAGTGTAAGGACCAAAAAACG

Ace file of the UniGene sp_v1.1_unigene39675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9RQ05_RICCO	-	-	1.0e-33	55%
FL-Next	sp=Protein ROOT HAIR DEFECTIVE 3 homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	protein	-	-	2.57061e-33	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SSN0

Fln msg: Distance to subject end: 438 aas, your sequence is shorter than subject: 141 - 795

Fln protein: VEITALSSYEEKEDLFKEQVAFLRQRFFHSIVPGGLAGDRRAVVPASGFPFSIQQIWKIIKK*RS*LARSQGDGCNCSLRRDCKEKVDHLTNDEDWRELDKEVQSGPIPGFGKKLSTILDTYFSSYDMEVVYFEESVRTKK

Protein Length: 142

Fln nts: TGTTGAGATAACAGCATTGTCAAGTTATGAAGAGAAAGAAGATCTGTTTAAAGAACAGGTTGCCTTTCTAAGGCAGCGTTTCTTCCACTCCATTGTCCCTGGTGGACTTGCTGGTGACAGAAGAGCAGTTGTTCCTGCATCTGGCTTTCCGTTCAGCATACAACAGATCTGGAAAATTATCAAGAAATAAAGATCTTGACTTGCCCGCTCACAAGGTGATGGTTGCAACTGTTCGTTGCGAAGAGATTGCAAGGAAAAAGTTGATCACTTGACCAATGATGAGGATTGGCGTGAACTGGACAAAGAGGTACAGTCTGGGCCAATTCCAGGGTTTGGGAAGAAGCTGAGTACAATACTGGACACATATTTCTCAAGTTATGATATGGAAGTGGTTTATTTTGAGGAAAGTGTAAGGACCAAAAAACG

Fln Alignment:

sp_v1.1_unigene39675___VEITALSSYEEKEDLFKEQVAFLRQRFFHSIVPGGLAGDRRAVVPASGFPFSXXXXXXXXXXXRS-*LARSQGDGCNCSLRRDCKEKVDHLTNDEDWRELDKEVQSGPIPGFGKKLSTILDTYFSSYDMEVVYFEESVRTKK
Q9SSN0_______________VEVVALSSYEEKEEQFKEQIASLRQRFMHSIAPGGLAGDRRGVIPASGFAFSADQIWRVIKENKDLDLPAHKVMVATVRCEEIANEKFAHFITNEDWRKLDEEVQAGPVSNFGKRLTTILGSCLSEYDGEATFFDEGVRSSK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
120	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain