SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39615

Length: 391 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39615
CAGTTCGGGAGACTCTGACATACACTGCTCTTTTGAGACTTCCCAGGACATTATCAAAGCATCAGAGGGAACAACGAGCTCAGGAAGTGATTCATGAACTAGGCCTTGAAAGATGCCAGGATACGATAATAGGAGGAAGCTTTGTTAGGGGCATTTCTGGAGGTGAAAGAAAGAGAGTTTGTATTGGATGTGAAATTCTGATTGATCCTTCTCTATTATTTCTAGATGAACCTACTTCTGGTCTGGATTCCACCACAGCACTACGAATTGTTCAGATGTTGCATGATATAGCCCGGGCGGGCCGAACAGTTGTGAGCACAATTCATCAGCCTTCGAGTAGGCTGTTCCATAATTGATAAGCTGATACTTCTGGAGAAGGGCATTCTGTCTA

Ace file of the UniGene sp_v1.1_unigene39615 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SDN1_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	abc transporter family protein	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	0.0	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 385 aas, your sequence is shorter than subject: 118 - 819

Fln protein: VRETLTYTALLRLPRTLSKHQREQRAQEVIHELGLERCQDTIIGGSFVRGISGGERKRVCIGCEILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIARAGRTVVSTIHQPSSRLFHN*

Protein Length: 119

Fln nts: CAGTTCGGGAGACTCTGACATACACTGCTCTTTTGAGACTTCCCAGGACATTATCAAAGCATCAGAGGGAACAACGAGCTCAGGAAGTGATTCATGAACTAGGCCTTGAAAGATGCCAGGATACGATAATAGGAGGAAGCTTTGTTAGGGGCATTTCTGGAGGTGAAAGAAAGAGAGTTTGTATTGGATGTGAAATTCTGATTGATCCTTCTCTATTATTTCTAGATGAACCTACTTCTGGTCTGGATTCCACCACAGCACTACGAATTGTTCAGATGTTGCATGATATAGCCCGGGCGGGCCGAACAGTTGTGAGCACAATTCATCAGCCTTCGAGTAGGCTGTTCCATAATTGATAAGCTGATACTTCTGGAGAAGGGCATTCTGTCTA

Fln Alignment:

sp_v1.1_unigene39615___VRETLTYTALLRLPRTLSKHQREQRAQEVIHELGLERCQDTIIGGSFVRGISGGERKRVCIGCEILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIARAGRTVVSTIHQPSSRLFHN**AD---TSGEGHSV
B8LNF9_______________VRETLTYTALLRLPRTLTKHQREQRAQEVVRELGLERCQDTIIGGNFVRGISGGERKRVCIGCEILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIARAGRTVVSTIHQPSSRLFHK--FDKLILLGEGHSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain