SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39535

Length: 365 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene39535
CCACCAGCAGCGAGGGATTTGAAAAGTTTGAATTGGAAAGAAGGGCGGAGATGGGTTTAGAGCAGGCGTTGCAGGATGGCGATCTGCTCAGACAAGTAAATGCTCTCATTATTGCCCATTTGAGGGACAACAACTTAACACAGGCTGCCACTGCGGTGGCCACTGCGACGATGACGCCGCTAAACGTGGAAGTGGCGCAGAACAAGCTTTTGGATCTTGTCTGTAAGGGGCTGGCAGTTGAGAGAGAAGAGGCTGCAAGGGGAGTTAGTTCAACAGCGTCTACAGTTGCAGCAGATGCTAGTGCTGCTGGCGGAGGCGGCGCAGCAGCAGCGATGATGATGTCAGGTGGGCTATGGACCGCCGAT

Ace file of the UniGene sp_v1.1_unigene39535

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin family protein / WD-40 repeat family protein	-	-	6.0e-11	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	2.46734e-12	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SIL8

Fln msg: Distance to subject end: 332 aas, your sequence is shorter than subject: 121 - 484

Fln protein: TSSEGFEKFELERRAEMGLEQALQDGDLLRQVNALIIAHLRDNNLTQAATAVATATMTPLNVEVAQNKLLDLVCKGLAVEREEAARGVSSTASTVAADASAAGGGGAAAAMMMSGGLWTAD

Protein Length: 122

Fln nts: CCACCAGCAGCGAGGGATTTGAAAAGTTTGAATTGGAAAGAAGGGCGGAGATGGGTTTAGAGCAGGCGTTGCAGGATGGCGATCTGCTCAGACAAGTAAATGCTCTCATTATTGCCCATTTGAGGGACAACAACTTAACACAGGCTGCCACTGCGGTGGCCACTGCGACGATGACGCCGCTAAACGTGGAAGTGGCGCAGAACAAGCTTTTGGATCTTGTCTGTAAGGGGCTGGCAGTTGAGAGAGAAGAGGCTGCAAGGGGAGTTAGTTCAACAGCGTCTACAGTTGCAGCAGATGCTAGTGCTGCTGGCGGAGGCGGCGCAGCAGCAGCGATGATGATGTCAGGTGGGCTATGGACCGCCGAT

Fln Alignment:

sp_v1.1_unigene39535___ELERRAEMGLEQALQDGDLLRQVNALIIAHLRDNNLXXXXXXXXXXXXXPLNVEVAQNKLLDLVCKGLAVEREE
D7SIL8_______________ELQRKMEPNLEQTLQEGKLYRQINALIVAYLRDYNLTQAASAVASATMTPLNVDTPPYKLIDLVAKGLAVEKDE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
210		33		66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain