SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39461

Length: 469 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene39461
ATGGGGGTAAAATGGTGGCAGTGAAGCAGCTCTCTTCTGAATCTAGACAAGGAAAACGCGAGTTCATAAATGAATTAGCTGTAATATCTGCAGTACAGCATAGGAACCTTGTAAAGTTGCATGGATGTTGTCTAGAAGCAAATAATCGGCTCTTGGTCTATGAGTATTTGGAAAACAACAGTCTTGCAAAAGCTTTATTCGGTAATAAGAGGTCTCTAGATTGGGCTACTCGATATAATATCTGTATTGGCACTGCACGTGGACTCGCTTACCTTCATGAGGAGTCCAGTGCTCGGATAATTCATCGAGATATCAAAGCCAGTAACATTCTGTTGGATGAGTCACTGAACCCTAAGATAGCAGATTTTGGCTTGGCTAAGCTATGCGATGAGAAGAAAACTCACATCAGCACCAGAGTTGCCGGAACAATTGGATATTTGTCTCCGGAATATGCCATGCGGGGTCAATC

Ace file of the UniGene sp_v1.1_unigene39461

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI14_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	atp binding	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	85%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	85%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	85%
Blast2go	Protein kinase-like domain	IPR011009	-	85%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	85%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 155 - 402

Fln protein: GGKMVAVKQLSSESRQGKREFINELAVISAVQHRNLVKLHGCCLEANNRLLVYEYLENNSLAKALFGNKRSLDWATRYNICIGTARGLAYLHEESSARIIHRDIKASNILLDESLNPKIADFGLAKLCDEKKTHISTRVAGTIGYLSPEYAMRGQ

Protein Length: 156

Fln nts: ATGGGGGTAAAATGGTGGCAGTGAAGCAGCTCTCTTCTGAATCTAGACAAGGAAAACGCGAGTTCATAAATGAATTAGCTGTAATATCTGCAGTACAGCATAGGAACCTTGTAAAGTTGCATGGATGTTGTCTAGAAGCAAATAATCGGCTCTTGGTCTATGAGTATTTGGAAAACAACAGTCTTGCAAAAGCTTTATTCGGTAATAAGAGGTCTCTAGATTGGGCTACTCGATATAATATCTGTATTGGCACTGCACGTGGACTCGCTTACCTTCATGAGGAGTCCAGTGCTCGGATAATTCATCGAGATATCAAAGCCAGTAACATTCTGTTGGATGAGTCACTGAACCCTAAGATAGCAGATTTTGGCTTGGCTAAGCTATGCGATGAGAAGAAAACTCACATCAGCACCAGAGTTGCCGGAACAATTGGATATTTGTCTCCGGAATATGCCATGCGGGGTCAATC

Fln Alignment:

sp_v1.1_unigene39461___GKMVAVKQLSSESRQGKREFINELAVISAVQHRNLVKLHGCCLEANNRLLVYEYLENNSLAKALFGNKR-SLDWATRYNICIGTARGLAYLHEESSARIIHRDIKASNILLDESLNPKIADFGLAKLCDEKKTHISTRVAGTIGYLSPEYAMRGQ
A9NWR4_______________GTVVAVKQLSAQSKQGVKEFLTEIATISDVQHENLVKLHGCCAEEEHRILVYEYLEKNSIAQALLDNTRMDMDWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNVLLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
319		66	33		0.997455
340	66		33		0.997452
341		33	66		0.997452
344	66			33	0.997452
371		66	33		0.997452
379	66		33		0.997452
385			66	33	0.997452
392		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain