SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39447

Length: 428 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene39447
CGTCGTGACCTTGGCTGTCACTCATATTTGCGTCGCCAAGAACCCGAATGGGCGTAATTGAGACGACATTCATGGTGGTGCACCAGAGGGTTCTTCCCCTGTTCCAGCGCGCGGCGAGAGAGGGCATGGTTCTTGATCTGGAGGACGTTTTCCATCGCTATACCTTCGACAGCGTCTCTAATTTTTTGCTCGGCTTTGATCCGGGCTCTCTGACCCTCGACCTCCCGCCGAGTCCTTTTTCGGAGGCGTTTGACCGGTCCATCCGGTCATCCACGCACCGGTTCCTTCTGCCGGCGTTTTACTGGAAGACGCTGAGGTTTCTCAATTTGGGGATGGAGCGGCAGTTGCGGCGGGATCGTAGAGTCGTGTATGATTATGTCGGAAAGATCTGTGATATCAAAAGGCGAGAGCTGCAGGCGCAGCAGAAT

Ace file of the UniGene sp_v1.1_unigene39447

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SCQ6_RICCO	-	-	2.0e-17	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	cytochrome p450	-	-	1.9774e-17	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	very long-chain fatty acid biosynthetic process	GO:0042761	Biological Process	1.9774e-17	59%
Blast2go	suberin biosynthetic process	GO:0010345	Biological Process	1.9774e-17	59%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.9774e-17	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	1.9774e-17	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWX3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 250 aas, your sequence is shorter than subject: 142 - 519

Fln protein: S*PWLSLIFASPRTRMGVIETTFMVVHQRVLPLFQRAAREGMVLDLEDVFHRYTFDSVSNFLLGFDPGSLTLDLPPSPFSEAFDRSIRSSTHRFLLPAFYWKTLRFLNLGMERQLRRDRRVVYDYVGKICDIKRRELQAQQN

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTGCGTCGCCAAGAACCCGAATGGGCGTAATTGAGACGACATTCATGGTGGTGCACCAGAGGGTTCTTCCCCTGTTCCAGCGCGCGGCGAGAGAGGGCATGGTTCTTGATCTGGAGGACGTTTTCCATCGCTATACCTTCGACAGCGTCTCTAATTTTTTGCTCGGCTTTGATCCGGGCTCTCTGACCCTCGACCTCCCGCCGAGTCCTTTTTCGGAGGCGTTTGACCGGTCCATCCGGTCATCCACGCACCGGTTCCTTCTGCCGGCGTTTTACTGGAAGACGCTGAGGTTTCTCAATTTGGGGATGGAGCGGCAGTTGCGGCGGGATCGTAGAGTCGTGTATGATTATGTCGGAAAGATCTGTGATATCAAAAGGCGAGAGCTGCAGGCGCAGCAGAAT

Fln Alignment:

sp_v1.1_unigene39447___LSLIFASPRTRMGVIETTFMVVHQRVLPLFQRAAREGMVLDLEDVFHRYTFDSVSNFLLGFDPGSLTLDLPPSPFSEAFDRSIRSSTHRFLLPAFYWKTLRFLNLGMERQLXXXXXXXXXXXGKICDIKRRELQAQQN
A9NWX3_______________VAIAMSSTTFRDQNINQTQGLVLERLIPVLEESCKKNSSLDIQDILLRLNFDNICLALSGKDAGFLLPDLPEVPFAVAFEQAIESSTYRLIIPSFVSKVMQFFNVGFERKHRRAMGIILEYASELVRFKMAELEKMSN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
235	33	66			0.997452
284		66		33	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain