SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39400

Length: 894 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene39400 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GEPR] COG0477 Permeases of the major facilitator superfamily	-	-	6.0e-05	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	protein	-	-	8.05747e-43	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	8.05747e-43	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 297 - 626

Fln protein: KRRQAHRDARVLAIDVLDEKDEPERKSTIEISEVGKRDSKSKDETEIELPLQIQDQEATSPSGSAARVETEPKSRRVVLGEDHNTIQLIRSIDFWLFFLVYLCGGTLGLVFISNLGQIAESRGYSKASILVSLSSSSSFFGRLASSAPDYLLRFKICIPRPAWIGISMVPMAASFFLLLINDNVALYVGTAILGFFTGMVTSIAISITSELFGLKNFGVNHNIVVVNIPLGSLALGYLAGIFYDDRAKKNKIQANQLSAPPVHRIGSTVCHGAHCYNDTFLIWGSVCVIGIVLSFIL

Protein Length: 298

Fln nts: AAAACGCCGGCAGGCACATCGGGACGCGAGGGTTCTAGCAATCGATGTACTGGACGAGAAAGATGAGCCCGAGCGCAAAAGCACTATTGAAATAAGTGAAGTGGGCAAACGAGACTCCAAGTCCAAAGACGAAACTGAAATTGAATTGCCCCTGCAAATTCAAGATCAAGAAGCCACCAGCCCCAGCGGCAGCGCGGCCCGGGTGGAGACCGAACCGAAATCCAGGCGAGTAGTCCTTGGGGAGGATCATAACACAATCCAACTGATCAGAAGCATTGATTTCTGGCTATTTTTCCTGGTCTATCTCTGCGGAGGAACGTTGGGTTTGGTATTCATCAGCAATTTGGGGCAAATTGCAGAGTCGCGCGGCTACTCCAAAGCTTCCATCTTAGTTTCACTCTCGTCTTCTTCCAGCTTCTTCGGCCGCCTGGCGTCTTCTGCGCCCGACTACTTATTGAGGTTCAAAATCTGCATCCCCAGACCGGCCTGGATCGGCATATCGATGGTTCCCATGGCAGCCTCGTTCTTCCTGCTTCTAATCAACGACAACGTCGCTCTGTATGTGGGCACAGCCATCCTGGGATTCTTCACAGGGATGGTAACCTCCATTGCGATCTCCATCACCTCAGAGCTATTCGGTCTCAAGAATTTCGGAGTGAATCATAACATCGTGGTCGTAAACATCCCTCTGGGATCTCTAGCCTTGGGCTATTTGGCCGGCATTTTCTACGATGACAGAGCCAAGAAGAATAAAATACAGGCCAATCAGCTTTCGGCTCCTCCTGTGCATAGAATTGGCTCAACTGTTTGTCATGGAGCCCACTGCTACAACGATACGTTTCTCATATGGGGATCGGTCTGCGTGATCGGCATAGTACTGAGCTTCATTTTGTC

Fln Alignment:

sp_v1.1_unigene39400___DEPERKSTIEISEVGKRDSKSKDETEIELPLQIQDQEATS---PSGSAARVETEPKSRRVVLGEDHNTIQLIRSIDFWLFFLVYLCGGTLGLVFISNLGQIAESRGYXXXXXXXXXXXXXXXXXXXXXXAPDYLLRFKICIPRPAWIGISMVPMAASFFLLLINDNVALYVGTAILGFFTGMVTSIAISITSELFGLKNFGVNHNIVVVNIPLGS-LALGYLAGIFYD-DRAKKNKIQANQL-----SAPPVHRIGSTVCHGAHCYNDTFLIWGSVCVIGIVLSFIL
B8LRH5_______________ENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
318	33		66		0.997476
380		66		33	0.997452
470		66	33		0.997452
532		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain