SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39392

Length: 400 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene39392
ATGGGCTGCATTGATTTTTATGTAACAATAAAATATTTTGCCATGAAATTTTCAACAGGCAACACGAGAGCTCAGGGCTATGGGTGTCAAATCTCCAATTGTTGGATTAACTGGCAATGCTCTTGACCTTGCTGTCACTCAGTTTCTTGCTGCTGGTGTAGATGACTTCTTTACCAAACCTATATCAAGGCATCAGTTAGTGAGGCTACTACAGGCACATAATCTGGTTATTCCATCAAAGAAATAAGAGGGCTGCTGCTGAAAACAAGGAAGCAGATTGTGGATCCAGGAATGGAATTTTTGTTAGTAACGGTTTCTTTGTGATAAAATTGTACATTTGAGCCATCTACCCCCTTTATTCCCCCAAGATGTATTATTTCACTTCAAATGTTGCTTCCAC

Ace file of the UniGene sp_v1.1_unigene39392

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	extra response regulator	-	-	1.0e-05	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	hypothetical protein SELMODRAFT_451436 [Selaginella moellendorffii]	-	-	2.59569e-17	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal transduction response regulator, receiver domain	IPR001789	-	2.59569e-17	89%
Blast2go	CheY-like superfamily	IPR011006	-	2.59569e-17	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 82 - 252

Fln protein: WAALIFM*Q*NILP*NFQQATRELRAMGVKSPIVGLTGNALDLAVTQFLAAGVDDFFTKPISRHQLVRLLQAHNLVIPSKK*

Protein Length: 83

Fln nts: ATGGGCTGCATTGATTTTTATGTAACAATAAAATATTTTGCCATGAAATTTTCAACAGGCAACACGAGAGCTCAGGGCTATGGGTGTCAAATCTCCAATTGTTGGATTAACTGGCAATGCTCTTGACCTTGCTGTCACTCAGTTTCTTGCTGCTGGTGTAGATGACTTCTTTACCAAACCTATATCAAGGCATCAGTTAGTGAGGCTACTACAGGCACATAATCTGGTTATTCCATCAAAGAAATAA___GAGGGCTGCTGCTGAAAACAAGGAAGCAGATTGTGGATCCAGGAATGGAATTTTTGTTAGTAACGGTTTCTTTGTGATAAAATTGTACATTTGAGCCATCTACCCCCTTTATTCCCCCAAGATGTATTATTTCACTTCAAATGTTGCTTCCAC

Fln Alignment:

sp_v1.1_unigene39392___QATRELRAMGVKSPIVGLTGNALDLAVTQFLAAGVDDFFTKPISRHQLVRLLQAHNL
D5AC19_______________EATRQLRSMGVKTPIVALTGNTLQSDKDLFFEAGVDDFQTKPLSKDRLVQLLARYGV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
242		75	25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain