SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39376

Length: 303 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene39376
ATGGGCAGCTCAATTGGGTTTCAATATGGAGTGGCTATTCTGGGTTTTGGCCACTGTGTTTGGCTGCGTAGGATATATTTTGCTGAAAATTGTGACGGCCATCTGGTGGAAGCCTCTGCAAGTAAAGAGTTACTTTGAATCCCAAGGAGTCAGAGGTCCTCCTTACAGACTGTTAACTGGAAATGTTGCTGATATGGTTCGGATGGATACTCAAGCGAAGTCCACACCCATGCCATGGTCACATGACATAGTGCCCCGAGTTCTACCACATTATCATCACTGGACTAAAATCTACGGTAAGGA

Ace file of the UniGene sp_v1.1_unigene39376

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9H987_POPTR	-	-	9.0e-22	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	cytochrome p450	-	-	4.6383e-43	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	4.6383e-43	67%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	4.6383e-43	67%
Blast2go	Methane metabolism	00680	4.6383e-43	67%
Blast2go	Phenylpropanoid biosynthesis	00940	4.6383e-43	67%
Blast2go	Biosynthesis of phenylpropanoids	01061	4.6383e-43	67%
Blast2go	Metabolic pathways	01100	4.6383e-43	67%
Blast2go	Biosynthesis of secondary metabolites	01110	4.6383e-43	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	4.6383e-43	67%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	4.6383e-43	67%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	4.6383e-43	67%
Blast2go	response to light stimulus	GO:0009416	Biological Process	4.6383e-43	67%
Blast2go	protein binding	GO:0005515	Molecular Function	4.6383e-43	67%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	4.6383e-43	67%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	4.6383e-43	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 92 - 517

Fln protein: MEWLFWVLATVFGCVGYILLKIVTAIWWKPLQVKSYFESQGVRGPPYRLLTGNVADMVRMDTQAKSTPMPWSHDIVPRVLPHYHHWTKIYGK

Protein Length: 93

Fln nts: ATGGGCAGCTCAATTGGGTTTCAAT_-_ATGGAGTGGCTATTCTGGGTTTTGGCCACTGTGTTTGGCTGCGTAGGATATATTTTGCTGAAAATTGTGACGGCCATCTGGTGGAAGCCTCTGCAAGTAAAGAGTTACTTTGAATCCCAAGGAGTCAGAGGTCCTCCTTACAGACTGTTAACTGGAAATGTTGCTGATATGGTTCGGATGGATACTCAAGCGAAGTCCACACCCATGCCATGGTCACATGACATAGTGCCCCGAGTTCTACCACATTATCATCACTGGACTAAAATCTACGGTAAGGA

Fln Alignment:

sp_v1.1_unigene39376___MEWLFWVLATVFGCVGYILLKIVTAIWWKPLQVKSYFESQGVRGPPYRLLTGNVADMVRMDTQAKSTPMPWSHDIVPRVLPHYHHWTKIYGK
A9NWW9_______________MEWLFWVLAAAFGCLGYFVLRIVTVIWWKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
6			25	25	0.995534
7		50	25		0.995534

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain