SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39360

Length: 541 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39360
AACCATCCAAAAATGTCATATTGATAGTATCTTTACGGAGAGTAAATTTTTACAAGCAGAGTCCTTGCTGCAGCTTGCTAGGGCCCTCATTTGGGCAGCAGGTAGACCACAGAAGGGTAGTAGTTCACCTGAAGATGAAGACACTGCTGTTTTCTGCCTGGAATTATTAATTGCAATTACTTTAAACAATCGGGATAGAATTATGCTCCTGTGGCAGGGTGTTTATGAGCATATTGCTGGTATAGTGCAATCAACAGTTATGCCATGTGCTCTTGTGAAAAAGCTGTCTTTGGACTCCTACGCATCTGTCAACGTTTGCTTCCTTACAAGGAAAATCTTGCAGATGAACTTTTGAGATCTTTGCAACTTATTTTAAAATTGGATGCCCGGGTAGCAGATGCATATTGTGAACACATCACTCAAGAAGTCATGCGTCTTGTGAAAGCAAATGCTGGCCACATTAAATCTCCAATGGGGTGGCGAACAGTTTCATCTCTGCTTTCTATTACTGCTCGCCATCCAGAAGCATCAGAATGTGGTT

Ace file of the UniGene sp_v1.1_unigene39360

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO	-	-	94%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	93%
Blast2go	pattern formation	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	93%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	93%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	93%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	93%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	93%
Blast2go	cell adhesion	GO:0007155	Biological Process	93%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	93%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	93%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	93%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	93%
Blast2go	GTP:GDP antiporter activity	GO:0010292	Molecular Function	93%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Overlapping hits, possible frame ERROR between 283 and 277, Distance to subject end: 287 aas, your sequence is shorter than subject: 180 - 1451

Fln protein: TIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGSSSPEDEDTAVFCLELLIAITLNNRDRIMLLWQGVYEHIAGIVQSTVMPCALxxxxVFGLLRICQRLLPYKENLADELLRSLQLILKLDARVADAYCEHITQEVMRLVKANAGHIKSPMGWRTVSSLLSITARHPEASECG

Protein Length: 181

Fln nts: AACCATCCAAAAATGTCATATTGATAGTATCTTTACGGAGAGTAAATTTTTACAAGCAGAGTCCTTGCTGCAGCTTGCTAGGGCCCTCATTTGGGCAGCAGGTAGACCACAGAAGGGTAGTAGTTCACCTGAAGATGAAGACACTGCTGTTTTCTGCCTGGAATTATTAATTGCAATTACTTTAAACAATCGGGATAGAATTATGCTCCTGTGGCAGGGTGTTTATGAGCATATTGCTGGTATAGTGCAATCAACAGTTATGCCATGTGCTCTTxxxxxxxxxxxxGTCTTTGGACTCCTACGCATCTGTCAACGTTTGCTTCCTTACAAGGAAAATCTTGCAGATGAACTTTTGAGATCTTTGCAACTTATTTTAAAATTGGATGCCCGGGTAGCAGATGCATATTGTGAACACATCACTCAAGAAGTCATGCGTCTTGTGAAAGCAAATGCTGGCCACATTAAATCTCCAATGGGGTGGCGAACAGTTTCATCTCTGCTTTCTATTACTGCTCGCCATCCAGAAGCATCAGAATGTGGTT

Fln Alignment:

sp_v1.1_unigene39360___TIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGSSSPEDEDTAVFCLELLIAITLNNRDRIMLLWQGVYEHIAGIVQSTVMPCALVxxAVFGLLRICQRLLPYKENLADELLRSLQLILKLDARVADAYCEHITQEVMRLVKANAGHIKSPMGWRTVSSLLSITARHPEASECG
Q42510_______________TIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGTSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIATIAQSTVMPCNLVxxAIFGLLRICQRLLPYKESLADELLRSLQLVLKLDARVADAYCEQIAIEVSRLVKANANHIRSQAGWRTITSLLSITARHPEASESG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain