SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39358

Length: 375 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39358
TGCTTCCTTTCTTATCCCTATTGTATCGCGGTGCTCGATGATTCGTATGCAACAGCTTTCTGAGCGATCGAAACCATTGGCCATGGTCTTGGCTCCCACTAGGGAACTCTGTGCACAGGTAGAAGAGCAGGCCAAATCACTGGGCAAAGGGTTGCCTTTCAAGACAGCTCTCATTGTAGGTGGAGACGCAATGCCGCGTCAGGTTTACAGGATTAAACAAGGGATTGAGTTAATTATTGCCACACCAGGAAGGCTCGTCGATCTTCTTTCAAAGCATGATATTGAGTTAGATGATGTCTGTATGTTTGTTCTGGATGAAGTGGATTGTATGCTGCAGCAAGGATTTCGTGACCAAGTCATGCAAATAATTCAGGC

Ace file of the UniGene sp_v1.1_unigene39358

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD/DEAH helicase family protein	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	dead deah box helicase family protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	0.0	80%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRR8

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 124 - 413

Fln protein: ASFLIPIVSRCSMIRMQQLSERSKPLAMVLAPTRELCAQVEEQAKSLGKGLPFKTALIVGGDAMPRQVYRIKQGIELIIATPGRLVDLLSKHDIELDDVCMFVLDEVDCMLQQGFRDQVMQIIQ

Protein Length: 125

Fln nts: TGCTTCCTTTCTTATCCCTATTGTATCGCGGTGCTCGATGATTCGTATGCAACAGCTTTCTGAGCGATCGAAACCATTGGCCATGGTCTTGGCTCCCACTAGGGAACTCTGTGCACAGGTAGAAGAGCAGGCCAAATCACTGGGCAAAGGGTTGCCTTTCAAGACAGCTCTCATTGTAGGTGGAGACGCAATGCCGCGTCAGGTTTACAGGATTAAACAAGGGATTGAGTTAATTATTGCCACACCAGGAAGGCTCGTCGATCTTCTTTCAAAGCATGATATTGAGTTAGATGATGTCTGTATGTTTGTTCTGGATGAAGTGGATTGTATGCTGCAGCAAGGATTTCGTGACCAAGTCATGCAAATAATTCAGGC

Fln Alignment:

sp_v1.1_unigene39358___AMVLAPTRELCAQVEEQAKSLGKGLPFKTALIVGGDAMPRQVYRIKQGIELIIATPGRLVDLLSKHDIELDDVCMFVLDEVDCMLQQGFRDQVMQIIQ
B8LRR8_______________ALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMSGVHVVVGTPGRVFDMLRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
241		75		25	0.996478
345		33		66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain