SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39208

Length: 507 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene39208
ATGTGCAAACAATGTCAGTTCAGATTTCCTGAGGCCATGCCCTTCTTCATCCAGAAGAAGATTCATATAAAACTTATCATTGCGTGTACTGTCGCTGCAGCTGCACTGTTAGTTCTTGTTATCGGCTGCCTTTTGTACAGAAGCCCTGATCGAGATAGTATGGAAGCCCTATCTTGGGATATGAAATCCTTTTACAAACTGAACTTCACTGACGATGATGTTCTCCATTGCTTGACGGAAGAGAACATGATTGGCAGTGGGGGATCTGGAAAGGTATACAGAGGACAGTTAAGAGAGGGAGAAGTTATTGCTGTAAAGCAGCTGTGGACCAACAACAATGCCACCATGCTTAACCACAGCAAAGAGGCACTCAGATATCGACAATTCAAGACGGAGGTTGAAACCTTAGGCTCTATCAGACATAAAAATATAGTGAAACTCTACTGCTGCATTTCTAGCACAGAGTCACACCTCCTTGTATACGAATACATGAAGAATGGGAGTTTG

Ace file of the UniGene sp_v1.1_unigene39208

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=1 Tax=Medicago truncatula RepID=A2Q515_MEDTR	-	-	7.0e-28	52%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	46%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	1.2765e-27	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	1.2765e-27	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.2765e-27	69%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.2765e-27	69%
Blast2go	Protein kinase-like domain	IPR011009	-	1.2765e-27	69%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	1.2765e-27	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 169 - 998

Fln protein: MCKQCQFRFPEAMPFFIQKKIHIKLIIACTVAAAALLVLVIGCLLYRSPDRDSMEALSWDMKSFYKLNFTDDDVLHCLTEENMIGSGGSGKVYRGQLREGEVIAVKQLWTNNNATMLNHSKEALRYRQFKTEVETLGSIRHKNIVKLYCCISSTESHLLVYEYMKNGSL

Protein Length: 170

Fln nts: ATGTGCAAACAATGTCAGTTCAGATTTCCTGAGGCCATGCCCTTCTTCATCCAGAAGAAGATTCATATAAAACTTATCATTGCGTGTACTGTCGCTGCAGCTGCACTGTTAGTTCTTGTTATCGGCTGCCTTTTGTACAGAAGCCCTGATCGAGATAGTATGGAAGCCCTATCTTGGGATATGAAATCCTTTTACAAACTGAACTTCACTGACGATGATGTTCTCCATTGCTTGACGGAAGAGAACATGATTGGCAGTGGGGGATCTGGAAAGGTATACAGAGGACAGTTAAGAGAGGGAGAAGTTATTGCTGTAAAGCAGCTGTGGACCAACAACAATGCCACCATGCTTAACCACAGCAAAGAGGCACTCAGATATCGACAATTCAAGACGGAGGTTGAAACCTTAGGCTCTATCAGACATAAAAATATAGTGAAACTCTACTGCTGCATTTCTAGCACAGAGTCACACCTCCTTGTATACGAATACATGAAGAATGGGAGTTTG

Fln Alignment:

sp_v1.1_unigene39208___RDSMEALSWDMKSFYKLNFTDDDVLHCLTEENMIGSGGSGKVYRGQLREGEVIAVKQLWTNNNATMLNHSKEALRYRQFKTEVETLGSIRHKNIVKLYCCISSTESHLLVYEYMKNGSL
Q19AV8_______________KKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNG-------FQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
101			66	33	0.997452
289	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain