SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39106

Length: 548 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene39106
CGTCGTGACCTTGGCTGTCACTCAACTTTTTATAACAACATCTTCATCAAGAGACATTGATTTTCTTAAAGCTGGCAACTTGGTGGTCTGTGCAGCAGTCCAAGTCGCAGGTTTTGTACTCTGTTTACATGGGGCAGCAAGGATCACCCACAAAGCTCAAAGAGTAGTCTCTATTGCTAGCCAATGGCATGCATTGGTGACCTGTCAATCACATGACATTTCTGAATCGGAAACTGAAAGCATGACTGAATCACATGCTGTAGATGTTGATGGGATGTGCCTTTCGCCAACTGAATATGGAAGTGATATGGAATTAGATGCTGATGTCTTTACTATTGTTCCCTCAATATATGAATCTTCTTCCTTTCAGAAGAGACAAGCTGTTGATTCCAGGTTCTTGCACACTATCACTTCATATCTAGCATGCATCCTCATATGGAGCCAAATGTTGACCACTAGAGTGGCACCTGATGATTTTATGAAGACTCCATTCCCAAGGATGTACCAATGGACACTTGTAGCATCAGATATCATCAGATTCCTAGAGG

Ace file of the UniGene sp_v1.1_unigene39106

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3537 domain containing protein	-	-	4.0e-34	38%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	52%
Blast2go	protein	-	-	6.75425e-18	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	6.75425e-18	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3537	IPR021924	-	6.75425e-18	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9RF58

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 182 - 470

Fln protein: VVTLAVTQLFITTSSSRDIDFLKAGNLVVCAAVQVAGFVLCLHGAARITHKAQRVVSIASQWHALVTCQSHDISESETESMTESHAVDVDGMCLSPTEYGSDMELDADVFTIVPSIYESSSFQKRQAVDSRFLHTITSYLACILIWSQMLTTRVAPDDFMKTPFPRMYQWTLVASDIIRFLE

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTTATAACAACATCTTCATCAAGAGACATTGATTTTCTTAAAGCTGGCAACTTGGTGGTCTGTGCAGCAGTCCAAGTCGCAGGTTTTGTACTCTGTTTACATGGGGCAGCAAGGATCACCCACAAAGCTCAAAGAGTAGTCTCTATTGCTAGCCAATGGCATGCATTGGTGACCTGTCAATCACATGACATTTCTGAATCGGAAACTGAAAGCATGACTGAATCACATGCTGTAGATGTTGATGGGATGTGCCTTTCGCCAACTGAATATGGAAGTGATATGGAATTAGATGCTGATGTCTTTACTATTGTTCCCTCAATATATGAATCTTCTTCCTTTCAGAAGAGACAAGCTGTTGATTCCAGGTTCTTGCACACTATCACTTCATATCTAGCATGCATCCTCATATGGAGCCAAATGTTGACCACTAGAGTGGCACCTGATGATTTTATGAAGACTCCATTCCCAAGGATGTACCAATGGACACTTGTAGCATCAGATATCATCAGATTCCTAGAGG

Fln Alignment:

sp_v1.1_unigene39106___VTQLFITTSSSRDIDFLKAGNLVVCAAVQVAGFVLCLHGAARITHKAQRVVSIASQWHALVTCQSHDI
A9RF58_______________VWSAFVLLSSYEKFNFFRAGDLVVCSVVQLTGLMLCLNGAAKITHRAQRIIGIVSQWHALATCNPHAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain