SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39105

Length: 501 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene39105
TGCATTGTTATATTTGGTGATGCTGTCATGGCGACTTGCTCTAACTACAGTACTATTATGCTCTTTGATGTCGATAATCATGTTGTTATATAGCCGGTACCAAAGAAATGCTGCAAAATGTTCCCAAGAAGTTGTGGCGGAAGCTAATGATGTGGCACAAGAGGCACTATCTTCGGTACGAGTTGTGCGGACTTTTGGAACAGAGGCAAAAGAATGTGAAAGATATTCAAAGTGGTTGAAGAAGCTAGAAGGCATTAATTTGCGCCAGAATGTGGCTTGTGGATTTTGGAAATGGAGCTCAAATACTCTCTATCACGCAGCTCAGGTGGTTGCTTTGCTTATAGGAGGAGGATTTGTTATGGATGGCCATATAACTGCAGAGCAGCTGACAAAATTTATCATGTACTCTGAGTGGGTGATGCACTCAGCTTGGTGGGTAGGGATCATTGGTCTTCGTTAATGCAGTCAATTGGAGCTAGTGAAAGGTGTTTGAGCTCATAG

Ace file of the UniGene sp_v1.1_unigene39105

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily B, member 5, group TAP protein PpABCB5 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TQ95_PHYPA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	atp-binding cassette subfamily member group tap protein 5	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of growth rate	GO:0040010	Biological Process	72%
Blast2go	reproduction	GO:0000003	Biological Process	72%
Blast2go	nematode larval development	GO:0002119	Biological Process	72%
Blast2go	RNA interference	GO:0016246	Biological Process	72%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	72%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	72%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABW1

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 442 and 442, Unexpected STOP codon at 3' end. Distance to subject end: 268 aas, your sequence is shorter than subject: 161 - 316

Fln protein: MLSWRLALTTVLLCSLMSIIMLLYSRYQRNAAKCSQEVVAEANDVAQEALSSVRVVRTFGTEAKECERYSKWLKKLEGINLRQNVACGFWKWSSNTLYHAAQVVALLIGGGFVMDGHITAEQLTKFIMYSEWVMHSAWWVxxHWSSLMQSIGASERCLSS*

Protein Length: 162

Fln nts: TGCATTGTTATATTTGGTG_-_ATGCTGTCATGGCGACTTGCTCTAACTACAGTACTATTATGCTCTTTGATGTCGATAATCATGTTGTTATATAGCCGGTACCAAAGAAATGCTGCAAAATGTTCCCAAGAAGTTGTGGCGGAAGCTAATGATGTGGCACAAGAGGCACTATCTTCGGTACGAGTTGTGCGGACTTTTGGAACAGAGGCAAAAGAATGTGAAAGATATTCAAAGTGGTTGAAGAAGCTAGAAGGCATTAATTTGCGCCAGAATGTGGCTTGTGGATTTTGGAAATGGAGCTCAAATACTCTCTATCACGCAGCTCAGGTGGTTGCTTTGCTTATAGGAGGAGGATTTGTTATGGATGGCCATATAACTGCAGAGCAGCTGACAAAATTTATCATGTACTCTGAGTGGGTGATGCACTCAGCTTGGTGGGTAxxxxxxCATTGGTCTTCGTTAATGCAGTCAATTGGAGCTAGTGAAAGGTGTTTGAGCTCATAG

Fln Alignment:

sp_v1.1_unigene39105___MDGHITAEQLTKFIMYSEWVMHSAWWVGDHWSSLMQSIGASER
D5ABW1_______________MDGHITAEQLTKFILYSEWVMHSAWWVGDHWSSLMQSIGASEK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
116	75	25			0.996473
117	75	25			0.996473
118	75			25	0.996474
127	25	75			0.996473
129	75			25	0.996473
130	75	25			0.996473
131	25		75		0.996473
142	25		75		0.996473
231		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain