SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39081

Length: 462 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39081
ATCTTATGCAACCCACCTTTCGAAAACTAGAACTGTTAGTCTGTCTGCAGCTGTGGAAGGACCTTATGGACCAGATTCCAATTACTTTCTGAGATATGATAGTCTACTTCTGATTGCCGGTGGAAGTGGAGTGACTCCTTTCCTCAGCATACTGCAGGAAATTATGTCACAGAAATTAAATTCCACTCCAAGAGTTTTACTAATAATTGTAGTCAAGAAAAGAGAAGATCTATCTATGCTGAATCTCATCTCTCCCACATTGCTACATCAGTCAGGCTTACAGTCAGAAGGATTTTTGAAGGTCGAGGCATTCGTTACACAAGAAGAGGCACCAGACTATGAATCCCCATTACCAAACTATGAATTCAAGGCAGTGCAATTTGAGACGAAGGGAATTAACAGTACCATTCCAGCTCTGTTAGCGACGGAGAGCAAATCGTGGAGAGCTTCACTGATATTGAT

Ace file of the UniGene sp_v1.1_unigene39081 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ferric-chelate reductase, putative (EC:1.6.3.1)	-	-	5.0e-19	44%
FL-Next	sp=Respiratory burst oxidase homolog protein A; Solanum tuberosum (Potato).	-	-	0.0	29%
Blast2go	protein	-	-	8.11609e-19	60%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferric-chelate reductase.	EC:1.16.1.7	-	8.11609e-19	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	ferric-chelate reductase activity	GO:0000293	Molecular Function	8.11609e-19	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome b245, heavy chain	IPR000778	-	8.11609e-19	60%
Blast2go	Ferric reductase, NAD binding	IPR013121	-	8.11609e-19	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q948U0

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 153 - 963

Fln protein: SYATHLSKTRTVSLSAAVEGPYGPDSNYFLRYDSLLLIAGGSGVTPFLSILQEIMSQKLNSTPRVLLIIVVKKREDLSMLNLISPTLLHQSGLQSEGFLKVEAFVTQEEAPDYESPLPNYEFKAVQFETKGINSTIPALLATESKSWRASLIL

Protein Length: 154

Fln nts: ATCTTATGCAACCCACCTTTCGAAAACTAGAACTGTTAGTCTGTCTGCAGCTGTGGAAGGACCTTATGGACCAGATTCCAATTACTTTCTGAGATATGATAGTCTACTTCTGATTGCCGGTGGAAGTGGAGTGACTCCTTTCCTCAGCATACTGCAGGAAATTATGTCACAGAAATTAAATTCCACTCCAAGAGTTTTACTAATAATTGTAGTCAAGAAAAGAGAAGATCTATCTATGCTGAATCTCATCTCTCCCACATTGCTACATCAGTCAGGCTTACAGTCAGAAGGATTTTTGAAGGTCGAGGCATTCGTTACACAAGAAGAGGCACCAGACTATGAATCCCCATTACCAAACTATGAATTCAAGGCAGTGCAATTTGAGACGAAGGGAATTAACAGTACCATTCCAGCTCTGTTAGCGACGGAGAGCAAATCGTGGAGAGCTTCACTGATATTGAT

Fln Alignment:

sp_v1.1_unigene39081___TRTVSLSAAVEGPYGPDSNYFLRYDSLLLIAGGSGVTPFLSILQEIMSQKLNSTPRVLLIIVVKKREDLSMLNLISPTLLHQSGLQSEGFLK
Q948U0_______________TKTSLPKLLIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLKNIVTMEEQADLVSDFSGNSDMSAATSEQPALNKISPKKRKSTLK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
40		33	66		0.997453
50		66	33		0.997454
59		33		66	0.997452
76	33		66		0.997452
89		66		33	0.997452
125	66			33	0.997452
135	33	66			0.997452
190			66	33	0.997452
244		33		66	0.997476
427	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain