SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39062

Length: 555 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39062
CTTCTTTTCTCATTTGTTTCATGATACTCAGAGCAGAGGGGACGAAGCAGCGGCTGGAGTTTTTTCAGACGGTTTAGCACACTGGGGGAATGCTTGAGTTGGAGCTGTGAATTTCTTGAACTGTGCTTGTGGGTTTGTATATTGTACCTGAAGGGTCAAGTGGAGCTATAGTGCTGAATCTATTTTGGGGGAATATGGGAAAAGCGAGGGAGAAACTAGCGGTGGTAAGCTGTTCATGTTGGTTCCTCACACTTTTGCTGAGTGTTTTAGGGCAGTATGATGGGGTCATTGTGACACAGCAGGATTATCAGGCTCTTCAGGCCTTCAAACATGCCATTGATGATCCTCGAGGTGTTTTGAGGAGTTGGAATGACAGTGGGATTGGAGCATGCTCTGGAGGATGGCTTGGAATCAAATGTGTTAAGGGCCAAGTGATCTCTATACAGATTCCATGGAGGGGTCTGAGAGGTCGCATTACTGAGCAAGTGGGTCAGCTCACTGCATTGAGAAAGCTGAATCTGCATGACAATGCCTTAGCCGGTNAAGTGCCAAGTT

Ace file of the UniGene sp_v1.1_unigene39062

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Systemin receptor SR160 precursor, putative (EC:1.3.1.74)	-	-	6.0e-34	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	receptor-like kinase	-	-	2.88697e-35	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	2.88697e-35	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLV1

Fln msg: Distance to subject end: 503 aas, your sequence is shorter than subject: 120 - 607

Fln protein: MGKAREKLAVVSCSCWFLTLLLSVLGQYDGVIVTQQDYQALQAFKHAIDDPRGVLRSWNDSGIGACSGGWLGIKCVKGQVISIQIPWRGLRGRITEQVGQLTALRKLNLHDNALAGKVPS

Protein Length: 121

Fln nts: CTTCTTTTCTCATTTGTTTCATGATACTCAGAGCAGAGGGGACGAAGCAGCGGCTGGAGTTTTTTCAGACGGTTTAGCACACTGGGGGAATGCTTGAGTTGGAGCTGTGAATTTCTTGAACTGTGCTTGTGGGTTTGTATATTGTACCTGAAGGGTCAAGTGGAGCTATAGTGCTGAATCTATTTTGGGGGAAT_-_ATGGGAAAAGCGAGGGAGAAACTAGCGGTGGTAAGCTGTTCATGTTGGTTCCTCACACTTTTGCTGAGTGTTTTAGGGCAGTATGATGGGGTCATTGTGACACAGCAGGATTATCAGGCTCTTCAGGCCTTCAAACATGCCATTGATGATCCTCGAGGTGTTTTGAGGAGTTGGAATGACAGTGGGATTGGAGCATGCTCTGGAGGATGGCTTGGAATCAAATGTGTTAAGGGCCAAGTGATCTCTATACAGATTCCATGGAGGGGTCTGAGAGGTCGCATTACTGAGCAAGTGGGTCAGCTCACTGCATTGAGAAAGCTGAATCTGCATGACAATGCCTTAGCCGGTaAAGTGCCAAGTT

Fln Alignment:

sp_v1.1_unigene39062___QALQAFKHAIDDPRGVLRSWNDSGIGACSGGWLGIKCVKGQVISIQIPWRGLRGRITEQVGQLTALRKLNLHDNALAGKVP
B8LLV1_______________EALNAFRQSLNDTNNSLSDWNVDLVDPCSS-WSHVSCVNGRVATVTLANMSFSGIISPRIGQLTFLTYLTLEGNSLTGEIP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
391			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain