SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39038

Length: 462 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene39038
CGTCGTGACCTTGGCTGTCACTCAAGTTCGGAAATTGAATTTGATAGAATTACAAATACAGAGATTACCAGTAAGGATCAGGGGAGGAATGTGCTTCTGGTGGATGTATGGACTGGTTACGAATGGGATATTGGTCATTTCCAGGGAGCAAAAAGACCTGATGTTGATTGCTTCAGGAATACTAGTTTTGGAATTTCAGATTCAGAGAGAAACATTTCAGATCCATTGGCAGGGGTGGACAAAGCAAGTACTGATGTTATGATGTATTGCACGGGAGGAATTCGTTGTGATGTTTATTCTGTTATTCTAAGGCAGAAAGGTTTCCAAAACTTGTACACTCTGAAAGGGGGCATCACACAATACCTCAAGGAAGAGGGCCACTTTAAATGGATGGGAAATTTGTTTGTGTTTGATTCTCGGCTATCTGTCTCTCCAAATGTTTTCAAGCCTATAAATGCCACT

Ace file of the UniGene sp_v1.1_unigene39038

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rhodanese domain containing protein	-	-	3.0e-07	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rhodanese-like	IPR001763	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH7

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 154 - 523

Fln protein: RRDLGCHSSSEIEFDRITNTEITSKDQGRNVLLVDVWTGYEWDIGHFQGAKRPDVDCFRNTSFGISDSERNISDPLAGVDKASTDVMMYCTGGIRCDVYSVILRQKGFQNLYTLKGGITQYLKEEGHFKWMGNLFVFDSRLSVSPNVFKPINAT

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCGGAAATTGAATTTGATAGAATTACAAATACAGAGATTACCAGTAAGGATCAGGGGAGGAATGTGCTTCTGGTGGATGTATGGACTGGTTACGAATGGGATATTGGTCATTTCCAGGGAGCAAAAAGACCTGATGTTGATTGCTTCAGGAATACTAGTTTTGGAATTTCAGATTCAGAGAGAAACATTTCAGATCCATTGGCAGGGGTGGACAAAGCAAGTACTGATGTTATGATGTATTGCACGGGAGGAATTCGTTGTGATGTTTATTCTGTTATTCTAAGGCAGAAAGGTTTCCAAAACTTGTACACTCTGAAAGGGGGCATCACACAATACCTCAAGGAAGAGGGCCACTTTAAATGGATGGGAAATTTGTTTGTGTTTGATTCTCGGCTATCTGTCTCTCCAAATGTTTTCAAGCCTATAAATGCCACT

Fln Alignment:

sp_v1.1_unigene39038___RRDLGCHSSSEIEFDRITNTEITSKDQGRNVLLVDVWTGYEWDIGHFQGAKRPDVDCFRNTSFGISDSERNISDPLAGVDKASTDVMMYCTGGIRCDVYSVILRQKGFQNLYTLKGGITQYLKEEGHFKWMGNLFVFDSRLSVSPNVFKPINAT
B8LKH7_______________KKRLNVTNSSEIEFDGITNTEITNKDQRRKLLLLDVRNGYEWDIGHFQGAKRPDVDCFRSTTFGISDSEKKISDPLAGVDKASTDIMMYCTGGIRCDVYSVILRQKGFQNLYTLKGGIAQYLKEEGHFKWMGNLFVFDARLSVSPNVFKPMNAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain