SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38986

Length: 811 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38986

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GAMT2; GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	s-adenosyl-l-methionine:salicylic acid carboxyl methyltransferase-like protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	61%
Blast2go	gibberellin carboxyl-O-methyltransferase activity	GO:0010341	Molecular Function	61%
Blast2go	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	61%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVY6

Fln msg: Overlapping hits, possible frame ERROR between 277 and 277, Distance to subject end: 82 aas, your sequence is shorter than subject: 270 - 397

Fln protein: GNGDNSYALNSTRQGSVFKAVQPAFSQLIESLPIQNLDLIRIADLGCATGMNTVSEVDFVVKTLKSMCAERCLALPELQVLFNDLPSNDFNxxFMLLSKQKLDYYAMGVPRSFYNVLFPRGSIHICFSIMALHWLSQVPAVVEQEGSFAYNRGKVWINGNRAEIAKAYAEQSQKDLRQFFRARAHEMASGGVMFLCAMGRPNSAPAHHQVSAEGEYCGADFEAAWDDLISEGIVGAESRDSFNLPWYFPNAVEVREAVEASSAFEISGLE

Protein Length: 271

Fln nts: AGGTAACGGGGACAATAGTTATGCCCTCAATTCCACCCGGCAAGGATCTGTTTTCAAGGCCGTTCAGCCCGCTTTTTCCCAATTAATTGAGTCGCTTCCCATTCAAAACCTCGACCTGATACGAATCGCAGATTTGGGTTGCGCCACTGGAATGAACACGGTCTCGGAAGTGGACTTCGTGGTGAAAACACTGAAAAGCATGTGCGCCGAGCGATGTTTGGCACTTCCTGAGCTCCAGGTGCTTTTCAATGATTTGCCTTCCAATGATTTCAATxxxxxxTTCATGCTGTTAAGTAAACAGAAATTGGACTACTATGCGATGGGAGTGCCTCGATCATTCTACAACGTGCTGTTTCCTCGTGGCAGCATTCATATCTGTTTTTCTATTATGGCATTGCATTGGCTTTCTCAGGTTCCTGCAGTGGTGGAGCAAGAAGGTTCGTTTGCATACAACAGGGGGAAGGTGTGGATTAATGGGAACAGAGCAGAAATAGCCAAAGCGTATGCAGAGCAATCGCAGAAGGACCTCCGCCAATTCTTTCGTGCTCGAGCTCATGAAATGGCAAGTGGCGGTGTCATGTTCTTGTGCGCAATGGGTCGCCCCAACTCCGCGCCCGCTCATCACCAAGTGAGCGCAGAGGGCGAATACTGCGGCGCCGACTTCGAAGCAGCTTGGGACGACCTCATTTCGGAGGGAATCGTGGGGGCCGAGAGCAGAGATAGTTTCAACCTGCCATGGTACTTTCCAAACGCAGTAGAAGTGAGAGAAGCCGTCGAAGCGTCGTCGGCCTTCGAGATCAGCGGACTGGAGG

Fln Alignment:

sp_v1.1_unigene38986___GNGDNSYALNSTRQGSVFKAVQPAFSQLIESLPIQNLDLIRIADLGCATGMNTVSEVDFVVKTLKSMCAERCL----ALPELQVLFNDLPSNDFNGLFMLLSKQKLDYYAMGVPRSFYNVLFPRGSIHICFSIMALHWLSQVPAVVEQEGSFAYNRGKVWINGNRAEIAKAYAEQSQKDLRQFFRARAHEMASGGVMFLCAMGRPNSAPAHHQVSAEGEYCGADFEAAWDDLISEGIVGAESRDSFNLPWYFPNAVEVREAVEASSAFEISGLE
A9NVY6_______________GNSVASYAENSERQRHVFHALQSLFQAAIEKLRFPQEGPLRIADLGCATGINTVSDVDFVVKTLRNLWRDGHSNGGGSVAEFQAYFSDLPSNDFNGLFNLLDRPASPYFVAGVPGSFYNVLFPTSSIHVCFSVMALHWLSQVPQAIVQKTSPLYNKGRVWINRGSQDIAEAYSKQSESDLNAFINCRAQEMAPGGVIFLCMMGRPDSWLPTEQVSVGGEFCGQDFEDAWDELVTQGIISSDLRDSFNLPWYFPTAKELRRAVENCGVFEIESMQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
674		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain