SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38719

Length: 456 nt

UniGene Fasta

>sp_v1.1_unigene38719
CCCAGGGCTCATTGGTGGGGCTTACATTTCGTCAAGCGGAGTCATTCAGATCACCAACGCCGAAGGAGAGTGCGCAGCCCATCAAGAAGAGCAGGCGCGGCCCACGCTCTAGGAGTTCCCAGTATCGTGGTGTTACATTCTACAGGCGCACTGGAAGATGGGAATCTCACATATGGGATTGTGGGAAACAGGTCTATCTTGGTGGATTTGACACGGCCCATGCAGCTGCAAGGGCATATGATAGGGCAGCTATCAAATTCAGAGGTGTAGATGCCGATATTAACTTCAACATTGATGATTATGAAGAGGATGTGAAGCAGATGAATAAACTCACAAAGGAAGAATTTGTTCATGTCCTTCGTCGTCAAAGTACTGGATTTCCCAGAGGAAGTTCTAAGTTTAGAGGTGTGACCTTGCACAAGTGTGGCAGGTGGGAAGCCAGAATGGGACAATTTC

Ace file of the UniGene sp_v1.1_unigene38719

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	APETALA2-like protein 1 n=1 Tax=Pinus thunbergii RepID=Q76H95_PINTH	-	-	85%
FL-Next	tr=APETALA2-like protein 1; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	100%
Blast2go	ap2 domain-containing transcription factor	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	93%
Blast2go	meristem maintenance	GO:0010073	Biological Process	93%
Blast2go	specification of floral organ identity	GO:0010093	Biological Process	93%
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	0.0	93%
Blast2go	DNA-binding, integrase-type	IPR016177	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H95

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 151 - 519

Fln protein: QGSLVGLTFRQAESFRSPTPKESAQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIDDYEEDVKQMNKLTKEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQF

Protein Length: 152

Fln nts: CCCAGGGCTCATTGGTGGGGCTTACATTTCGTCAAGCGGAGTCATTCAGATCACCAACGCCGAAGGAGAGTGCGCAGCCCATCAAGAAGAGCAGGCGCGGCCCACGCTCTAGGAGTTCCCAGTATCGTGGTGTTACATTCTACAGGCGCACTGGAAGATGGGAATCTCACATATGGGATTGTGGGAAACAGGTCTATCTTGGTGGATTTGACACGGCCCATGCAGCTGCAAGGGCATATGATAGGGCAGCTATCAAATTCAGAGGTGTAGATGCCGATATTAACTTCAACATTGATGATTATGAAGAGGATGTGAAGCAGATGAATAAACTCACAAAGGAAGAATTTGTTCATGTCCTTCGTCGTCAAAGTACTGGATTTCCCAGAGGAAGTTCTAAGTTTAGAGGTGTGACCTTGCACAAGTGTGGCAGGTGGGAAGCCAGAATGGGACAATTTC

Fln Alignment:

sp_v1.1_unigene38719___VGLTFRQAESFRSPTPKESAQPIKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNIDDYEEDVKQMNKLTKEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQF
Q76H95_______________VGLTFRQAESFRSPTPKESAQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIDDYEEDVKQMNKLTKEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
205			75	25	0.996473
216			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain