SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38716

Length: 816 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38716 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp\|Q9FKB6.1\|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 dbj\|BAB09433.1\| non-phototropic hypocotyl-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NPH3	IPR004249	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 272 - 648

Fln protein: LSVLGIEMYQKVILAMKSRGVRHESIGTSLMHYAEQALKGLAKKWDASARTKLPSPAAALEQHEQRIVVETIVSLLPTEKNALPIAFLFGLLRTAVMLDTTVACRLDLEKRIGRQLECACLDDLLIPSFSHSGDTLFDVDAVHRILGNFLQQDENQDAVDSNLGGYESDGLADSPSQAAIIKVAKLLDNYLAEIAPDANLKLLKFIAIAELMPEYARPVDDGLYRAIDIYLKAHPGLTDMERRKLCKIIDCQKLSQEACSHAAQNDHLPVQL

Protein Length: 273

Fln nts: TTGTCGGTTCTTGGCATCGAAATGTATCAGAAAGTAATATTGGCCATGAAATCCAGAGGCGTAAGGCATGAGAGCATCGGGACATCGCTCATGCATTATGCCGAGCAGGCCCTGAAAGGGCTTGCCAAGAAATGGGATGCCTCTGCTCGAACAAAGCTGCCTAGCCCTGCTGCTGCCTTGGAGCAGCACGAACAGAGAATCGTGGTGGAGACTATTGTGAGCCTCTTGCCTACAGAGAAAAACGCCCTACCCATCGCCTTTCTCTTCGGCCTGCTTCGTACTGCTGTGATGCTCGACACCACCGTTGCTTGCAGGCTGGACCTAGAGAAAAGAATCGGGCGTCAGCTCGAATGTGCCTGCCTCGATGATCTGCTTATCCCTTCCTTCTCGCACAGCGGAGATACTCTGTTTGATGTGGATGCAGTGCATAGAATACTAGGGAATTTTTTACAGCAGGATGAGAATCAGGATGCGGTGGATTCAAACTTGGGTGGATACGAGTCTGATGGCCTGGCCGATTCTCCTTCTCAGGCTGCCATCATCAAAGTTGCCAAGCTGTTGGATAACTACCTGGCAGAAATAGCACCAGATGCAAATCTCAAGCTTTTGAAATTCATAGCCATTGCTGAATTGATGCCAGAGTATGCGCGTCCTGTGGACGATGGGTTGTATAGAGCTATTGATATCTACTTGAAGGCCCATCCCGGATTGACAGACATGGAACGCAGGAAGCTCTGCAAGATCATCGATTGCCAGAAGCTCTCCCAAGAAGCATGCTCACACGCAGCACAGAACGACCACCTCCCCGTCCAGCTG

Fln Alignment:

sp_v1.1_unigene38716___LGIEMYQKVILAMKSRGVRHESIGTSLMHYAEQALKGLAKKWDASARTKLPSPAAALEQHEQRIVVETIVSLLPTEKNALPIAFLFGLLRTAVMLDTTVACRLDLEKRIGRQLECACLDDLLIPSFSHSGDTLFDVDAVHRILGNFLQQDENQDAVDSNLGGYESDGLADSPSQAAIIKVAKLLDNYLAEIAPDANLKLLKFIAIAELMPEYARPVDDGLYRAIDIYLKAHPGLTDMERRKLCKIIDCQKLSQEACSHAAQNDHLPVQL
B8LPD8_______________LSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQGIAKTLSLTSAPCEADQRE---LLETIESLLPDHRAGNTTKFLFGLLRTANILNASDSCKKSLERRIGLQLEHATLDDLLIPSYSYTVETLYDIDCVQRILQHFMAGQQGAESTLVNPHGFEEGGFMGSPSMTPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
495		33		66	0.997456
564			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain