SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38682

Length: 456 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene38682
TGACGGAGATTCTTCCTCTTCTTCATCATCATTCTACGGGGATTTCAAAGCATTTCGCCAAGTCACACGCGAACGATTATTACATGAAATGCTTCGATCAACCAAGTCAAATGAATCAAAATCAAGTTGGAAGGTTCTTATCATGGACAACGTCGTGACCAAAGTGATGTCTTATACATGCAAAATGGCTGACATTACAGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTATACAAAAAGGCCTATGTTTTCTTCAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGATGAACTTGGAGTA

Ace file of the UniGene sp_v1.1_unigene38682

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plant sec1, putative n=1 Tax=Ricinus communis RepID=B9RBT6_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	snare-interacting protein keule	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sec1-like protein	IPR001619	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG5

Fln msg: Distance to subject end: 483 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 122 - 627

Fln protein: MLRSTKSNESKSSWKVLIMDNVVTKVMSYTCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLYKKAYVFFSSPIPKDLVGHIKRDISILSRIAALREMNLE

Protein Length: 123

Fln nts: TGACGGAGATTCTTCCTCTTCTTCATCATCATTCTACGGGGATTTCAAAGCATTTCGCCAAGTCACACGCGAACGATTATTACATGAA_-_ATGCTTCGATCAACCAAGTCAAATGAATCAAAATCAAGTTGGAAGGTTCTTATCATGGACAACGTCGTGACCAAAGTGATGTCTTATACATGCAAAATGGCTGACATTACAGAGGAGGGCATCTCAGTGGTGGAGGACCTCAACAGGCGGAGGCAACCATTCCCTGCAATGGAGGCTGTCTACTTTATTCGGCCGTCAAAGGAGAATGTGATCACGTTCATGTCTGATATGTCAGGAAATTCTCCGTTATACAAAAAGGCCTATGTTTTCTTCAGTTCGCCTATCCCTAAAGATCTGGTTGGCCATATTAAAAGGGATATAAGTATTCTATCACGAATAGCTGCTTTAAGAGAGATGAACTTGGAGTA

Fln Alignment:

sp_v1.1_unigene38682___WKVLIMDNVVTKVMSYTCKMADITEEGISVVEDLNRRRQPFPAMEAVYFIRPSKENVITFMSDMSGNSPLYKKAYVFFSSPIPKDLV-----GHIKRDISILSRIAALREMNLE
A9NYG5_______________YKVLILDKFCRDILSPLIHVKDLRKHGITLYFTIDKERQTIPDVPAIYFVQPTSANIERIIVDASRG--VYESFHLNFSSSLPRSLLEELAAGTLKSD--CIHRIGKVYDQYLE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
161	66			33	0.997452
162	66			33	0.997454
163	66		33		0.997454
170		33	66		0.997452
171	33			66	0.997452
175	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain