SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38619

Length: 517 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene38619
GGAAGGGCGAGCTTGAAGATGAAATGGCTTTGGTTAATGATAAATTGCAATCGTCAGCTGCACATGAGAGTTTCCTTGCGGGTGAAACTGACTTTCTTGATCTGGCTAAGCAGTCAGAAAGTGTTGGAGAGAAAAGTGCACATCAAGAATTGAAATCAGATTACGGGGAATTGATTGAAGGGAAATCGCGGGATCATGGTGGAAATCAAAAGAGTTTGAAATTAAATACAAATGCTAATTCTGATAAAGAGGCGGAGTCCAAGTCCAAGAATAACAGGCAGGCAGTAAAGAGGTCAAATGTAATTGCCAAGCAAGTGATCAGCAAGACTTCTGCACTTAGTATGGGGTTTGTTTCCCAGCTTTGGGTGGACACAACATCTTGGACTGTCGAAGTGGTAGAGATTAGGCCAAGCTTGCTTTCTGGAGAAATGGAGAGAATTTTTTTGCAGGAATTATGTCAAGTAGGAGATGTCATACTTGTTGAGGATGAAAACATGCTGGATAATGAGCCAACAAT

Ace file of the UniGene sp_v1.1_unigene38619

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRC-barrel domain-containing protein	-	-	9.0e-09	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	uncharacterized protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PRC-barrel-like	IPR011033	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC24

Fln msg: Distance to subject end: 161 aas, your sequence is shorter than subject: 171 - 465

Fln protein: KGELEDEMALVNDKLQSSAAHESFLAGETDFLDLAKQSESVGEKSAHQELKSDYGELIEGKSRDHGGNQKSLKLNTNANSDKEAESKSKNNRQAVKRSNVIAKQVISKTSALSMGFVSQLWVDTTSWTVEVVEIRPSLLSGEMERIFLQELCQVGDVILVEDENMLDNEPT

Protein Length: 172

Fln nts: GGAAGGGCGAGCTTGAAGATGAAATGGCTTTGGTTAATGATAAATTGCAATCGTCAGCTGCACATGAGAGTTTCCTTGCGGGTGAAACTGACTTTCTTGATCTGGCTAAGCAGTCAGAAAGTGTTGGAGAGAAAAGTGCACATCAAGAATTGAAATCAGATTACGGGGAATTGATTGAAGGGAAATCGCGGGATCATGGTGGAAATCAAAAGAGTTTGAAATTAAATACAAATGCTAATTCTGATAAAGAGGCGGAGTCCAAGTCCAAGAATAACAGGCAGGCAGTAAAGAGGTCAAATGTAATTGCCAAGCAAGTGATCAGCAAGACTTCTGCACTTAGTATGGGGTTTGTTTCCCAGCTTTGGGTGGACACAACATCTTGGACTGTCGAAGTGGTAGAGATTAGGCCAAGCTTGCTTTCTGGAGAAATGGAGAGAATTTTTTTGCAGGAATTATGTCAAGTAGGAGATGTCATACTTGTTGAGGATGAAAACATGCTGGATAATGAGCCAACAAT

Fln Alignment:

sp_v1.1_unigene38619___KGELEDEMALVNDKLQSSAAHESFLAGETDFLDLAKQSESVGEKSAHQELKSDYGELIEGKSRDHGGNQKSLKLNTNANSDKEAESKSKNNRQAVKRSNVIAKQVISKTSALSMGFVSQLWVDTTSWTVEVVEIRPSLLSGEMERIFLQELCQVGDVILVEDENMLDNEP
D5AC24_______________KGELKDEMALVNDKLQASAAPESFLAGETDFLDLAKQSESVGEKSVQQELKSDYEELIGGKSRDHGGNQKNLKLNTNANSDKEVESKSKNSRQAVKRSNVIAKQVISKTSALSMGFVSQLWVDTTSWTVEVVEIRPSLLSGEMERIVLQELCQVGDVILVEDENMLDNEP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
144			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain