SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38610

Length: 470 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38610
GATTCAATGAATCAGATGTAGCAGGGAAGGAAGGTTCAGGAACATTAAGGAATATTAATAGTCCAACTACAACTTCTTGTTCTGAAGAAGAAGGATTGCATCTTCTAGCTCTTCTTATACAGTGTGCAGAGGCTGTTTCAGAAGACAATCATGAAGAGGCAAACAGTATCCTGCCCTATATTTATGAGCTTTCTTCACCTTTTGGGAGTTCAGTTCACCGTGTGGCTGCATACTTTGCTGAGGCCTTATCATGTCGGTTGATCAGTTCATGCTTAGGTATCTACTCTCCTATCATGAATGAATCACGGAACCAAAATATTGTATCAGCATTCCAAGTATATAATGGTATCAGCCCATTTGTGAAGTTTTCTCATTTCACTGCAAATCAGGCAATCCAACAAGTATTCCAAGGTGAAAATAGTGTGCACATCATTGATCTTGACATAATGCAAGGTCTGCAATGGCCGGGC

Ace file of the UniGene sp_v1.1_unigene38610 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SCARECROW n=1 Tax=Pinus sylvestris RepID=Q0MRQ2_PINSY	-	-	72%
FL-Next	tr=SCARECROW; Pinus sylvestris (Scots pine).	-	-	72%
Blast2go	gras family transcription factor	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of protein location in nucleus	GO:0051457	Biological Process	81%
Blast2go	asymmetric cell division	GO:0008356	Biological Process	81%
Blast2go	radial pattern formation	GO:0009956	Biological Process	81%
Blast2go	gravitropism	GO:0009630	Biological Process	81%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	81%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor GRAS	IPR005202	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q0MRQ2

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 156 - 842

Fln protein: FNESDVAGKEGSGTLRNINSPTTTSCSEEEGLHLLALLIQCAEAVSEDNHEEANSILPYIYELSSPFGSSVHRVAAYFAEALSCRLISSCLGIYSPIMNESRNQNIVSAFQVYNGISPFVKFSHFTANQAIQQVFQGENSVHIIDLDIMQGLQWPG

Protein Length: 157

Fln nts: GATTCAATGAATCAGATGTAGCAGGGAAGGAAGGTTCAGGAACATTAAGGAATATTAATAGTCCAACTACAACTTCTTGTTCTGAAGAAGAAGGATTGCATCTTCTAGCTCTTCTTATACAGTGTGCAGAGGCTGTTTCAGAAGACAATCATGAAGAGGCAAACAGTATCCTGCCCTATATTTATGAGCTTTCTTCACCTTTTGGGAGTTCAGTTCACCGTGTGGCTGCATACTTTGCTGAGGCCTTATCATGTCGGTTGATCAGTTCATGCTTAGGTATCTACTCTCCTATCATGAATGAATCACGGAACCAAAATATTGTATCAGCATTCCAAGTATATAATGGTATCAGCCCATTTGTGAAGTTTTCTCATTTCACTGCAAATCAGGCAATCCAACAAGTATTCCAAGGTGAAAATAGTGTGCACATCATTGATCTTGACATAATGCAAGGTCTGCAATGGCCGGGC

Fln Alignment:

sp_v1.1_unigene38610___PTTTSCSEEEGLHLLALLIQCAEAVSEDNHEEANSILPYIYELSSPFGSSVHRVAAYFAEALSCRLISSCLGIYSPI--MNESRNQNIVSAFQVYNGISPFVKFSHFTANQAIQQVFQGENSVHIIDLDIMQGLQWPG
Q0MRQ2_______________PSDITASDEEGLHLLALLLQCAEAVSADNFEEANTILPQITELSTPYGNSVQRVAAYFAEAMSARLVSSCIGMYSPLPPIHMSQSQKIVNAFQVFNGISPFVKFSHFTANQAIQEAFEREQRVHIIDLDIMQGLQWPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain