SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38590

Length: 452 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene38590
GTCCCTTGGGTTTACTCCAGTGCCCATTTCGGCTATTTCTGGATCAGGGACAGGAGATTTATTAGACCTTGTTTGCTCAGAATTAAAGCTCAGTGAGGCCTTGCAAGAAACAAATGAAGTTGAAGAGCGCATTCCTGCTATAGCTATTGTGGGCAGACCTAATGTAGGGAAAAGCAGCCTTTTAAATGCCTTAGTGCATGAGGAGAGGACAATCGTAAGTCCTATTAGTGGAACAACTCGTGATGCTATAGATACAGAGTTCATTGGACCAGATGGACAGGCCTACTGTCTCATTGACACTGCTGGAATCAGGCGAAGAGCAGCTGTAGTTGCAGCAGGCAGCAAGACTGAATCATTGTCAGTGAATAGAGCATTTCAAGCGATAAGACGCTCAGATGTTGTGGCACTTGTTATTGATGCAATGGCATGCATCACCGAGCAGGATTACAGGA

Ace file of the UniGene sp_v1.1_unigene38590

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein engA (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HNV9_POPTR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	gtp-binding protein	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	GTP-binding domain, HSR1-related	IPR002917	-	86%
Blast2go	Small GTP-binding protein domain	IPR005225	-	86%
Blast2go	GTP binding domain	IPR006073	-	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8Y1

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 150 - 324

Fln protein: SLGFTPVPISAISGSGTGDLLDLVCSELKLSEALQETNEVEERIPAIAIVGRPNVGKSSLLNALVHEERTIVSPISGTTRDAIDTEFIGPDGQAYCLIDTAGIRRRAAVVAAGSKTESLSVNRAFQAIRRSDVVALVIDAMACITEQDYR

Protein Length: 151

Fln nts: GTCCCTTGGGTTTACTCCAGTGCCCATTTCGGCTATTTCTGGATCAGGGACAGGAGATTTATTAGACCTTGTTTGCTCAGAATTAAAGCTCAGTGAGGCCTTGCAAGAAACAAATGAAGTTGAAGAGCGCATTCCTGCTATAGCTATTGTGGGCAGACCTAATGTAGGGAAAAGCAGCCTTTTAAATGCCTTAGTGCATGAGGAGAGGACAATCGTAAGTCCTATTAGTGGAACAACTCGTGATGCTATAGATACAGAGTTCATTGGACCAGATGGACAGGCCTACTGTCTCATTGACACTGCTGGAATCAGGCGAAGAGCAGCTGTAGTTGCAGCAGGCAGCAAGACTGAATCATTGTCAGTGAATAGAGCATTTCAAGCGATAAGACGCTCAGATGTTGTGGCACTTGTTATTGATGCAATGGCATGCATCACCGAGCAGGATTACAGGA

Fln Alignment:

sp_v1.1_unigene38590___EERIPAIAIVGRPNVGKSSLLNALVHEERTIVSPISGTTRDAIDTEFIGPDGQAYCLIDTAGIXXXXXXXXXGSKTESLSVNRAFQAIRRSDVVALVID
D5A8Y1_______________DHRSGYVAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQ-MVLYDTPGVIQKEM-----HKLDAMMMKNVHSATGNADCVLTVVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain