SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38541

Length: 478 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38541
CGTCGTGACCTTGGCTGTCACTCATCTCTTATTTGTGAGGGTAGTTCAACGCACAATATTCAGTACTTCTCAGTGATGTCCTCACGGGTTCTTATCAATGATGATTTTCTTCAATTTTTGTCTTCTGGCAGATATCTTCATTCACTGAAACTTTTTGACAATGGCTTTGAACCCAAAACTGGTGGATTGATATTCAATGCTCTTTGTCAGTGTGATTCTGATCTATCTGTTCTTGAACTCTGTGACAATAAGCTTTCTGGCTGGCTTTCCTGGCAACGTGAGATTTCTCCCCATTTCAGTTCATTACCGCCAAATGAACTACATTTCTTGCGATCACTAACTACTCTTAATCTAAGGGGAAACTTTCTAGAAAGCAAGGATGTGGAAATATTAAAAATGTTCCTGCAGTGTATGCCTCAGTTGCAAAATCTGGACTTGAGTGATAATCCTATAGGAGACAGTAGGTGTAAGAACTCTC

Ace file of the UniGene sp_v1.1_unigene38541 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S586_RICCO	-	-	3.0e-16	38%
FL-Next	tr=Putative uncharacterized protein Sb08g007590; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	38%
Blast2go	leucine-rich repeat family protein	-	-	6.71914e-18	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	6.71914e-18	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YTV8

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 159 - 606

Fln protein: RRDLGCHSSLICEGSSTHNIQYFSVMSSRVLINDDFLQFLSSGRYLHSLKLFDNGFEPKTGGLIFNALCQCDSDLSVLELCDNKLSGWLSWQREISPHFSSLPPNELHFLRSLTTLNLRGNFLESKDVEILKMFLQCMPQLQNLDLSDNPIGDSRCKNS

Protein Length: 160

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTTATTTGTGAGGGTAGTTCAACGCACAATATTCAGTACTTCTCAGTGATGTCCTCACGGGTTCTTATCAATGATGATTTTCTTCAATTTTTGTCTTCTGGCAGATATCTTCATTCACTGAAACTTTTTGACAATGGCTTTGAACCCAAAACTGGTGGATTGATATTCAATGCTCTTTGTCAGTGTGATTCTGATCTATCTGTTCTTGAACTCTGTGACAATAAGCTTTCTGGCTGGCTTTCCTGGCAACGTGAGATTTCTCCCCATTTCAGTTCATTACCGCCAAATGAACTACATTTCTTGCGATCACTAACTACTCTTAATCTAAGGGGAAACTTTCTAGAAAGCAAGGATGTGGAAATATTAAAAATGTTCCTGCAGTGTATGCCTCAGTTGCAAAATCTGGACTTGAGTGATAATCCTATAGGAGACAGTAGGTGTAAGAACTCTC

Fln Alignment:

sp_v1.1_unigene38541___ICEGSSTHNIQYFSVMSSRVL------INDDFLQFLSSGRYLHSLKLFDNGFEPKTGGLIFNALCQCDSDLSVLELCDNKLSGWLSWQREISPHFSSLPPNELHFLRSLTTLNLRGNFLESKDVEILKMFLQCMPQLQNLDLSDNPIGD
C5YTV8_______________LCQEGSSHGIQRFSIKSSQICETKPLTISSGLLNFLSSGKSLHLLSLNDTKMQSSLAQMIIHTLLESSCDLHTLEISENNIAGWLSKLNKSST--NSLALRSDIFMNSLSILNLRENNLQKDDVVDLHKILIKMPNLRDLDISGNPIMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain