SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38376

Length: 403 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene38376
ATGGGGATAACTTGCAAGGACAAACCTGCTCAAGACTTTTTCCGAGATTTCTGCCTGTTTGGAATTTGGCCACTTCCTAAAGGACTGAATTCATTACAATGGAAGGATCAGTGCTGCCATGCAAACGGCCTTATGAGGAAGCATATGGTGAATTCTGCAAGAAAAACAAAGATATGAAGAAATGGGTTGATCCAGTTCAAGGCCTGGCTAATGCTCGCCATGAGTTTGGTGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTCATGGAGCCTGAGACCATGAAAAGGATGTTTAGTGGAGAGCTCGGCCCAGAACGTGATTTCTACATATACAGCCGACATTTCAATCCAACTGTGTTGAATCTGGGGAGGCAGATTGCAGCTCT

Ace file of the UniGene sp_v1.1_unigene38376

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methionine gamma-lyase (EC:4.4.1.11); K01761 methionine-gamma-lyase [EC:4.4.1.11]	-	-	2.0e-31	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methionine gamma-lyase.	EC:4.4.1.11	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	85%
Blast2go	Selenocompound metabolism	00450		0.0	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Methionine gamma-lyase.	EC:4.4.1.11	-	2.0e-31	86%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Cysteine and methionine metabolism	00270		2.0e-31	86%
AutoFact	Selenocompound metabolism	00450		2.0e-31	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	methionine gamma-lyase activity	GO:0018826	Molecular Function	0.0	85%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	0.0	85%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg: Distance to subject end: 336 aas, your sequence is shorter than subject: 101 - 438

Fln protein: MEGSVLPCKRPYEEAYGEFCKKNKDMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKRMFSGELGPERDFYIYSRHFNPTVLNLGRQIAA

Protein Length: 102

Fln nts: ATGGGGATAACTTGCAAGGACAAACCTGCTCAAGACTTTTTCCGAGATTTCTGCCTGTTTGGAATTTGGCCACTTCCTAAAGGACTGAATTCATTACA_-_ATGGAAGGATCAGTGCTGCCATGCAAACGGCCTTATGAGGAAGCATATGGTGAATTCTGCAAGAAAAACAAAGATATGAAGAAATGGGTTGATCCAGTTCAAGGCCTGGCTAATGCTCGCCATGAGTTTGGTGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTCATGGAGCCTGAGACCATGAAAAGGATGTTTAGTGGAGAGCTCGGCCCAGAACGTGATTTCTACATATACAGCCGACATTTCAATCCAACTGTGTTGAATCTGGGGAGGCAGATTGCAGCTCT

Fln Alignment:

sp_v1.1_unigene38376___MEGSVLPCKRPYEEAYGEFCKKNKDMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKRMFSGELGPERDFYIYSRHFNPTVLNLGRQIAA
A9P2J0_______________MEGSVLPCKRPYEEAYGEFCKKNKVMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKKMFSGELGPERDFYIYSRHFNPTVLNLGRQMAA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
15		80	20		0.995493
16	75		25		0.996473
61		25		75	0.996473
176			14	85	0.993535
199		14		85	0.993541
200		14		85	0.993541
218		16		83	0.994516
233		16		83	0.994514
340	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain