SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38320

Length: 1391 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38320

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lectin protein kinase family protein n=2 Tax=Arabidopsis RepID=D7MA62_ARALY	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	lectin protein kinase family protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	0.0	63%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	63%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	63%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	63%
Blast2go	Protein kinase-like domain	IPR011009	-	63%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	63%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 330 - 431

Fln protein: MKTVSDQTQLGYIKVMDESPQPEGHGSRFWKRPGNIVGVSIGGALLFILIVLLIFFGLLRKKVQTTKAAAAKIDDGFLNTLSVLPPRFTFDELKEITDGFSRKLGSGGFGSVYEGILRDGTMLGVKQLEEASQGYDEFRREIASLGSLSHVNLVQLRGFCAEESHHLLVYEYMANRSLDGWLFSTDDNKLLSWGTRMSIAVDTARGMAFLHEECRECIVHFDVKPENILLDDKFRAKLSDFGLSKLIDRTDEHSRVLTRMRGTPGYLAPEWLMETGVGSKSDVYSLGIVLLELVSGRRCVDLSAPAEDCYLPASTIRRFQEGKLMEIVDP

Protein Length: 331

Fln nts: ATGGGGAATGCTGTATTTGCAAACGCCGTCCAGATTGAAAGTGGAGAGCGATTTCTTCGCGGATTTCTTTAATGATATCTGCCGCCTTCCCAACTACTGCGGCCCTTACGGTATTTGTGTGAATCCTGGAGCACGGTGCACCTGCCCGGCCCCGGAGTCGTCTTATTTCTCGCAGCCGGATCGGGCGTCCTCGGGTTGCAAGCCTAAGCAGGAACTTCGTGCCTTTGCTGTCATCCATTTGTCGAGGTGCGAGGAATCGATTATTTCCTAGCAGGTATTTAGATCCGCTTCAGGTAAGCCTTGATGAATGCAAGAGGCTCTGTTTGTCCAACTGCTCTTGCGTAGCTGCGTTCTACTGGCAATCCTCTGGCTCCTGCTTTCATTACGAAGAGCTTCTGTCT_-_ATGAAAACCGTATCAGATCAAACACAGTTAGGGTACATCAAGGTCATGGATGAATCACCCCAACCGGAAGGTCACGGATCTCGTTTCTGGAAGCGGCCCGGGAACATTGTCGGGGTCAGCATAGGGGGCGCTCTGTTGTTCATCCTCATTGTCTTATTAATTTTCTTTGGCCTTCTGCGAAAAAAGGtGCAGACAACAAAGGCGGCGGCAGCAAAAATCGACGATGGTTTCTTGAACACGCTGTCGGTTCTGCCTCCCAGATTCACCTTCGACGAACTGAAGGAAATCACGGACGGCTTCAGTCGGAAGCTGGGAAGCGGCGGGTTCGGGTCAGTGTATGAGGgAATCCTGAGAGACGGAACCATGctTGGCGTGAAGCAACTGGAAGAGGCTTCCCAGGGTTACGACGAGTTTCGAAGGGAAATAGCTAGTCTGGGAAGCCTGAGCCATGTCAACCTCGTCCAACTTCGGGGATTCTGCGCCGAAGAATCCCACCACCTGCTCGTCTATGAATACATGGCCAACCGCTCTCTGGATGGCTGGCTTTTCTCCACAGACGACAATAAGCTTCTGAGTTGGGGTACCCGGATGAGCATCGCAGTGGACACAGCCCGTGGGATGGCGTTCTTACACGAAGAATGCCGCGAATGTATTGTGCATTTCGATGTGAAACCCGAGAACATTCTCCTCGACGACAAGTTCAGGGCTAAATTATCAGACTTCGGTCTGTCCAAGCTCATTGACCGGACTGATGAGCATAGCCGAGTTTTGACACGGATGAGAGGCACGCCAGGCTACCTGGCGCCTGAATGGCTAATGGAGACAGGAGTCGGCAGCAAGAGCGACGTTTACAGCTTGGGCATCGTGTTGCTGGAGCTCGTATCCGGGCGGCGATGCGTGGACCTCTCAGCTCCAGCAGAAGACTGTTATCTTCCTGCCTCGACCATTCGGAGGTTTCAGGAGGGGAAATTAATGGAAATCGTGGATCCT

Fln Alignment:

sp_v1.1_unigene38320___FLNTLSVLPPRFTFDELKEITDGFSRKLGSGGFGSVYEGILRDGTMLGVKQL-EEASQGYDEFRREIASLGSLSHVNLVQLRGFCAEESHHLLVYEYMANRSLDGWLFSTDDNKLLSWGTRMSIAVDTARGMAFLHEECRECIVHFDVKPENILLDDKFRAKLSDFGLSKLIDRTDEHSRVLTRMRGTPGYLAPEWLMETGVGSKSDVYSLGIVLLELVSGRRCVDLSAPAEDCYLPASTIRRFQEGKLMEIVD
A9NM60_______________YLKNLTGLPAIFTYETIEIATGGFSKEIGKGGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLFDSD--KWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKR-DIESHLVTGVRGTPGYMAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNVDNTRDSDNWYFPSIAINKARQDKMEEIIE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
826	25	75			0.996473
834	75		25		0.996473
837	75			25	0.996473
840		25		75	0.996473
868		75	25		0.996473
875	75		25		0.996473
894		75	25		0.996473
921		25		75	0.996473
931	16		83		0.994512
943		83		16	0.994512
975	16			83	0.994512
977	83			16	0.994512
1019	83		16		0.994512
1225	25		75		0.996473
1226		75		25	0.996473
1228	75		25		0.996473
1229	75		25		0.996473
1230			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain