SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38244

Length: 657 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38244

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative; K13123 G patch domain-containing protein 1	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	72%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	72%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1604	IPR011666	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
267		20		80	0.995493
542			33	66	0.997452
606	75		25		0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain