SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38242

Length: 465 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38242
CGTCGTGACCTTGGCTGTCACTCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTGTTCTTTTCAGTATTGAGGATAAATAATGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGATAAAGGATATTCAAGCATTCATTGTGAACCAAATGCAGAAAATATAACCGTATGTATCACATCAACATGAACATGTACAAAATATAATCGCAAGTTAAGGCATGAACATGTATAAAATGTAGAGCGTGAGGCTCTTTTTACTCC

Ace file of the UniGene sp_v1.1_unigene38242 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA carboxylase, putative n=1 Tax=Ricinus communis RepID=B9SFG9_RICCO	-	-	4.0e-11	70%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	66%
Blast2go	acetyl-CoA carboxylase, putative [Ricinus communis]	-	-	8.09905e-11	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q42777

Fln msg: your sequence is shorter than subject: 60 - 731

Fln protein: RRDLGCHSMVKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSVLFSIEDK*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTGTTCTTTTCAGTATTGAGGATAAATAA___TGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGATAAAGGATATTCAAGCATTCATTGTGAACCAAATGCAGAAAATATAACCGTATGTATCACATCAACATGAACATGTACAAAATATAATCGCAAGTTAAGGCATGAACATGTATAAAATGTAGAGCGTGAGGCTCTTTTTACTCC

Fln Alignment:

sp_v1.1_unigene38242___VKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSVLFSIEDK
Q42777_______________VEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKDQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
110		80		20	0.995493
111		20		20	0.99255
135		75		25	0.996473
137			50	50	1.0
228	66	33			0.997452
229		33		66	0.997452
231	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain