SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38241

Length: 1319 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38241 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDU7_RICCO	-	-	5.0e-31	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	protein binding	-	-	1.12631e-34	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.12631e-34	59%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.12631e-34	59%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.12631e-34	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQG6

Fln msg:

Fln protein: MGACCCCCSREDGYNEESTRCICARCCCPSCIDCCCCGSSPTAEEHESLSAGQGVSSSAGLLVGASLETSIPDTYRAPPTPLPFDADTRYLRTPRDGSGIRNDKSCSIQRDSQSPRENTTEGEGEALAAFENLKSTDFKGQVPDSKPSSPGMCQPSKLSEIVSVTDEEDVCPTCLEGYDKENPRILTKCEHHFHLACILEWMERSDNCPVCYQVILYLCLL*

Protein Length: 223

Fln nts: ATTTGGGCCGCCCAGATATTCCCCGATAGTGTAAAGAAATTGTCCAAAGTCTTTAAGGGATTCGCTCGCAGGCGCCTGTGTTGCAGTGGAAGGAGCGACTGGCTGCTCGGGAGATATTACAGGGTGAAACCTAGGACGGGCTAGAATTTTTGAAGAATCAAATACATGTCCATGTCTATAAAACTGCATGATTGCTGGTTATAGAAGGCAGTGTTAAGCTTTATTGCAAGTGCAATGGTGCTGAGTCTATTCTTGGCAGGTTCATAATCATGTTGAGGCTTGTAGAATGGCCTTCACAGCTCACTGTGGGCACTTAATCATGGTGCGCACGATTGAGTAGTGTGCAAAGGATCATTGGCAATCCTCTTGAACAAGCAGAAGGTCAGAAAATCAGCAAGAGAA_-_ATGGGGGCATGTTGCTGCTGTTGCTCAAGGGAAGATGGTTACAATGAGGAAAGCACCAGGTGCATTTGTGCTCGCTGCTGTTGTCCATCATGCATTGACTGTTGCTGTTGTGGGTCTTCTCCCACAGCTGAAGAGCATGAGTCTTTGTCAGCTGGGCAAGGTGTGTCATCTTCAGCTGGGCTTTTAGTTGGAGCATCTTTGGAAACATCTATTCCTGATACATATCGGGCTCCTCCAACACCATTACCTTTTGATGCAGATACGAGGTACCTTCGGACACCACGTGATGGATCAGGGATAAGAAATGATAAGAGTTGTTCTATTCAAAGGGATTCTCAATCACCTAGAGAAAACACAACTGAGGGTGAGGGTGAAGCACTGGCTGCATTTGAAAATTTGAAGAGCACAGACTTCAAAGGTCAAGTGCCAGATAGCAAGCCTAGCTCTCCAGGAATGTGCCAACCATCCAAATTGAGTGAGATTGTTTCTGTAACAGATGAGGAGGATGTTTGTCCGACATGCCTTGAAGGATACGATAAGGAAAATCCCAGAATACTTACAAAATGTGAACACCATTTTCATCTTGCATGTATTCTCGAGTGGATGGAAAGGAGTGATAACTGTCCCGTATGTTACCAGGTTATTCTTTACCTTTGCCTGCTCTAA___ATATATCAGAGTTATTTGTTAGCCATACCTACAGCTTGAAATTGATGAGGCAATAATTTGGTCACAGTTTTCAAGATGAAGGGTCATCTCTTTCTCTATGCCATGTAGAAAAGTCTCTACAGTTTTGTCTGTATGTGGTGTTGCAACATTTATTGCATGTGAGGAGCAGAATTGACGAACTGTAGGTTCTGTTTAACAGATGCAGTGAAAAACTACACTATTGTGAAATTCCATTACTGAGTTGTGCATAA

Fln Alignment:

sp_v1.1_unigene38241___MGACCCCCSREDGYNEEST-------RXXXXXXXXXXXXXXXXCGSSPTAEEHEXXXXXXXXXXXXXXXXXXXL-ETSIPDTYRAPPTPLPFDADTRYLRTPRDGSGIRNDKSCS-IQRDSQSPRENTTEGEGEALAAFENLKSTDFKGQVPDSKPSSPGMCQPSK----LSEIVSVTDEEDVCPTCLEGYDKENPRILTKCEHHFHLACILEWMERSDNCPVCYQVILY
B8LQG6_______________MGAFCCCLGQED-FEEYSSYPNGYAFQHCLCVRCCVRWFIGMYSAFSYTVEGHDISPSIQGVTPSSSELTGVPSPDGSPPDTYRAPPRPLPYDADPRYVRLQRDGLVSRRDKTSSHVHGESELLRTSNSDGDGEPLTNLHRWNEVDYEDEGQGYQPESPGKQQSLKAIMRIESSLSLLGDEDICPTCLDGYNTENPKIPTQCGHHFHLGCIYEWMERSKNCPVCDKEMVF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
780	75		25		0.996473
825		25		75	0.996473
966	80	20			0.995493
967		20		80	0.995493
968		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain