SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38233

Length: 516 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene38233
CGTCGTGACCTTGGCTGTCACTCAATCTCAGCACAGGAATTGTTGGAACTCGAGGGTACATGGCTCCAGAATATCTTATTCATGGCCATATGACAGAAAAGATCGATGTCTATAGTTTTGGGGTGCTGGTTCTGGAGATCATAAGTGGCAGAAAAAATAACACTCCACTTCATCCAACTGATTTTCCATGCCTTTTGACAGTGATTTGGAATCATCATTTGTCAGGCACGCTTTCAAACATAATCGATGGTAGCATAGCAGAAACCTACCATGAGGAGGTACTGCGAGTTATTTACGTGGGTCTCCTCTGCACACAGGCTTCTGCAACACTGCGTCCTCCAATGTCGAAAGTTATCACGTTGCTCACAGGCGGAGACTCAAATCTTCCGCCAGTTACTCATCCCCCCTTCATGGATTTCACCTCTTCACAATCAAATGCCAGTGCCAGCGGTACTTCATCTGCATTTGAAATGTCTTACTTCAATTCAAACCCCCGAGACATTTCAATGTCGATGA

Ace file of the UniGene sp_v1.1_unigene38233

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] sp\|Q9CAL3.1\|CRK2_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 2; Short=Cysteine-rich RLK2; Flags: Precursor gb\|AAG52471.1\|AC010796_10 putative protein kinase; 37247-34801 [Arabidopsis	-	-	4.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein kinase	-	-	1.52109e-31	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.52109e-31	68%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.52109e-31	68%
Blast2go	Protein kinase-like domain	IPR011009	-	1.52109e-31	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 171 - 245

Fln protein: S*PWLSLNLSTGIVGTRGYMAPEYLIHGHMTEKIDVYSFGVLVLEIISGRKNNTPLHPTDFPCLLTVIWNHHLSGTLSNIIDGSIAETYHEEVLRVIYVGLLCTQASATLRPPMSKVITLLTGGDSNLPPVTHPPFMDFTSSQSNASASGTSSAFEMSYFNSNPRDISMSM

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAGCACAGGAATTGTTGGAACTCGAGGGTACATGGCTCCAGAATATCTTATTCATGGCCATATGACAGAAAAGATCGATGTCTATAGTTTTGGGGTGCTGGTTCTGGAGATCATAAGTGGCAGAAAAAATAACACTCCACTTCATCCAACTGATTTTCCATGCCTTTTGACAGTGATTTGGAATCATCATTTGTCAGGCACGCTTTCAAACATAATCGATGGTAGCATAGCAGAAACCTACCATGAGGAGGTACTGCGAGTTATTTACGTGGGTCTCCTCTGCACACAGGCTTCTGCAACACTGCGTCCTCCAATGTCGAAAGTTATCACGTTGCTCACAGGCGGAGACTCAAATCTTCCGCCAGTTACTCATCCCCCCTTCATGGATTTCACCTCTTCACAATCAAATGCCAGTGCCAGCGGTACTTCATCTGCATTTGAAATGTCTTACTTCAATTCAAACCCCCGAGACATTTCAATGTCGATGA

Fln Alignment:

sp_v1.1_unigene38233___NLSTGIVGTRGYMAPEYLIHGHMTEKIDVYSFGVLVLEIISGRKNNTPLHPTDFPCLLTVIWNHHLSGTLSNIIDGSIAETY-HEEVLRVIYVGLLCTQASATLRPPMSKVITLLTGGDSNLPPVTHPPFMD
B8LLL8_______________HVSTRVGGTIGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVNARLDASMQLLLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEITVQPTQPAFID

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
120			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain