SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38222

Length: 896 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38222

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FIST_C domain containing protein	-	-	6.0e-13	26%
FL-Next	sp=F-box/LRR-repeat protein At5g63520; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	35%
Blast2go	protein	-	-	1.24985e-27	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FIST C domain	IPR019494	-	1.24985e-27	51%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
396	80		20		0.995493
397	80	20			0.995493
405		20	80		0.995493
406			80	20	0.995493
407	80	20			0.995493
408	20	80			0.995493
438	80		20		0.995493
443		80		20	0.995493
482		85		14	0.993534
504		12		87	0.992556
507	12		87		0.992557
512		85	14		0.993533
514	85			14	0.993533
518		14	85		0.993533
520		14		85	0.993533
521	14	85			0.993533
668	11		88		0.92357

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain