SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38208

Length: 559 nt

UniGene Fasta

>sp_v1.1_unigene38208
ATGGGGCACAAGGGTTGCCATGGACAACAGATGAGCCAGAGGTTACTGTTGAATTAAAAGTTATATGTTTATTGGAGTCCAAATTTTGTATATTTGTATCGATAAAAGATCTCTGGGCATCATCTGAATCTTTTGCATCTGTGTTGGAAATGACAGTGTTTGATAAAGCCCCCTGTGAAAGAAAGCACTAAACCATTGGATGTGAAGCTTCACACTGAAATAAGGGCAGTTGACCGTGCCGAATTTGACCACATTATTTCAGAAAGACTCAAAGCCATAGAGCAAGAAAGACTAGAACAGGAGAGATTGCAGAAGTTAGCCGAAGAAGAAGAGGAGATCAAGAGGTTGAGAAAAGAGTTGGTTCCGCGTGCTCAACCAATGCCCTTCTTTGACCGACCTTTCATTCCCAAAAGATCACCAAAGCTTCCAACCATCCCCAAGGAGCCCAGGTTCCATATTCCTAATCACAAAAGAGCAAAGTCCATATCGTGGAATGATTTCAATGCTTATCAATAAGAAATTCCAGAATGATGGAAGATATCTGTGTACAACTACATTA

Ace file of the UniGene sp_v1.1_unigene38208

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	microtubule-associated protein [Populus tremula x Populus tremuloides]	-	-	4.0e-11	38%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	60%
Blast2go	targeting protein for xklp2 containing expressed	-	-	2.13001e-30	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9IK60

Fln msg: atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 121 - 187

Fln protein: QCLIKPPVKESTKPLDVKLHTEIRAVDRAEFDHIISERLKAIEQERLEQERLQKLAEEEEEIKRLRKELVPRAQPMPFFDRPFIPKRSPKLPTIPKEPRFHIPNHKRAKSISWNDFNAYQ*

Protein Length: 122

Fln nts: ATGGGGCACAAGGGTTGCCATGGACAACAGATGAGCCAGAGGTTACTGTTGAATTAAAAGTTATATGTTTATTGGAGTCCAAATTTTGTATATTTGTATCGATAAAAGATCTCTGGGCATCATCTGAATCTTTTGCATCTGTGTTGGAA_-_ATGACAGTGTTTGATAAAGCCCCCTGTGAAAGAAAGCACTAAACCATTGGATGTGAAGCTTCACACTGAAATAAGGGCAGTTGACCGTGCCGAATTTGACCACATTATTTCAGAAAGACTCAAAGCCATAGAGCAAGAAAGACTAGAACAGGAGAGATTGCAGAAGTTAGCCGAAGAAGAAGAGGAGATCAAGAGGTTGAGAAAAGAGTTGGTTCCGCGTGCTCAACCAATGCCCTTCTTTGACCGACCTTTCATTCCCAAAAGATCACCAAAGCTTCCAACCATCCCCAAGGAGCCCAGGTTCCATATTCCTAATCACAAAAGAGCAAAGTCCATATCGTGGAATGATTTCAATGCTTATCAATAAGAAATTCCAGAATGATGGAAGATATCTGTGTACAACTACATTA

Fln Alignment:

sp_v1.1_unigene38208___QCLIKPPVKESTKPLDVKLHTEIRAVDRAEFDHIISERLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRAQPMPFFDRPFIPKRSPKLPTIPKEPRFHIPNHKRAK-SISWNDFNAY
B9IK60_______________ECLIKPPVKENTKPVDLKLHSDIRAVERADFDHQVSEKMSLIEQYKMERERQRKLAEEEEIRRLRKEL-VPKAQPMPYFDRPFIPRRSIKHPTVPREPRFHMPQHKKIKCCLSWSNVSSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain