SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38192

Length: 797 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0497 membrane protein 1 n=1 Tax=Picea sitchensis RepID=U4971_PICSI	-	-	64%
FL-Next	sp=CASP-like protein 5; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	61%
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	61%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
170	33	66			0.997464
173		66	33		0.997454
174			33	66	0.997454
343		40	60		1.0
344		60	40		1.0
399	25		75		1.0
424	14		85		0.993533
552		87	12		0.992554
558		75		25	1.0
619	87			12	0.992554
622		12	87		0.992554
624	12			87	0.992554
625	87		12		0.992554
629	85		14		0.993533
634	85	14			0.993533
635	14			85	0.993533
639	85	14			0.993533
677			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain