SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38157

Length: 564 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene38157
ATGGGGATTGTTGTATCTTCTTATTTTATGGTATTTTTCTTTTGTATTACACAAAACTTCGAACGGCCAAATTTTGCCATCTCAAATATCCACCTATTATTTGATTTCCTCATAAAAAATCAGCGTAAGATTTTAAAGATACACTTGAACCAGGATATTTGAATTCAATTTGCTGGTAACATAATTGGTAGAAGGGGATGAAMATGGCAKAGAGGACCGTGGAGATCCAGACGGAAGGAAAAGCAGTGGACAAACCTGGCATTTGCCACATCATCAAAGAGGTCATTGGTTTTGTGCTTTACATGCACCAACAAATTCCTCATACACTGCAGCAACTGGAGGTGGAGTTTGCAAGTCTGAAACTGGAGCAACAAAGAATGGTGACTGCATCAACTGAAAGAGAGATGCAATTTAAACCTTCTTCTCAAAGGAAAATGATAGGACAATCAAGGGAAATAAAGAGGGGAATCAAGAAGCTTGAAAAGCTTATGACTTCTATTTCCAATCTACTTTCTGCAATGCAAACTATGGTTCATGAAATTCCTGAAGTTCAGTGGGTGCTTT

Ace file of the UniGene sp_v1.1_unigene38157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	44%
Blast2go	hypothetical protein ARALYDRAFT_470297 [Arabidopsis lyrata subsp. lyrata]	-	-	6.02813e-20	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7KCC3

Fln msg: Distance to subject end: 137 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 117 - 263

Fln protein: RTVEIQTEGKAVDKPGICHIIKEVIGFVLYMHQQIPHTLQQLEVEFASLKLEQQRMVTASTEREMQFKPSSQRKMIGQSREIKRGIKKLEKLMTSISNLLSAMQTMVHEIPEVQWVL

Protein Length: 118

Fln nts: ATGGGGATTGTTGTATCTTCTTATTTTATGGTATTTTTCTTTTGTATTACACAAAACTTCGAACGGCCAAATTTTGCCATCTCAAATATCCACCTATTATTTGATTTCCTCATAAAAAATCAGCGTAAGATTTTAAAGATACACTTGAACCAGGATATTTGAATTCAATTTGCTGGTAACATAATTGGTAGAAGGGGATGAAcATGGCAtAGAGGACCGTGGAGATCCAGACGGAAGGAAAAGCAGTGGACAAACCTGGCATTTGCCACATCATCAAAGAGGTCATTGGTTTTGTGCTTTACATGCACCAACAAATTCCTCATACACTGCAGCAACTGGAGGTGGAGTTTGCAAGTCTGAAACTGGAGCAACAAAGAATGGTGACTGCATCAACTGAAAGAGAGATGCAATTTAAACCTTCTTCTCAAAGGAAAATGATAGGACAATCAAGGGAAATAAAGAGGGGAATCAAGAAGCTTGAAAAGCTTATGACTTCTATTTCCAATCTACTTTCTGCAATGCAAACTATGGTTCATGAAATTCCTGAAGTTCAGTGGGTGCTTT

Fln Alignment:

sp_v1.1_unigene38157___VEIQTEGKAVDKPGICHIIKEVIGFVLYMHQQIPHTLQQLEVEFASLKLEQQRMVTASTEREMQFKPSSQRKMIGQSREIKRGIKKLEKLMTSISNLLSAMQTMVHEIPEVQWVL
D7KCC3_______________VDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVIQDMSLEFDGLQTELTDLEANLTQP--QVKPLVRRKLVSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPDIQKVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain