SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38129

Length: 343 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38129
CGTCGTGACCTTGGCTGTCACTCATTTTATGTATAATCTGCCACCTGAATTTCATTTTGGTATGTTAGATTGGAAGCCAGAAAGGAGTGTATGGCCGACAAATCTCACTGAAATCCCTCGATATCCTGGAGGACTCAATTTGCAGCACAGTCCAGAATACTGGCTTACCTTCGATCTACTGTCTTCAAACATACCAGGCAGAAACTCTCCCTGCAGTGCCCGGAGAGTAGAAAATTCCAAAGAGGCCGATGTTTTCTTTGTGCCCTTTTTTTCTTCATTGAGTTATAACAGGCATTCAAAAGTTGAGACCCGTGGGCATAAGAGTAAAAATGAACTTCTGCAG

Ace file of the UniGene sp_v1.1_unigene38129 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides]	-	-	7.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	exostosin family protein	-	-	1.52736e-33	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	1.52736e-33	72%
Blast2go	megagametogenesis	GO:0009561	Biological Process	1.52736e-33	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	1.52736e-33	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV69

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 114 - 446

Fln protein: VVTLAVTHFMYNLPPEFHFGMLDWKPERSVWPTNLTEIPRYPGGLNLQHSPEYWLTFDLLSSNIPGRNSPCSARRVENSKEADVFFVPFFSSLSYNRHSKVETRGHKSKNELLQ

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATGTATAATCTGCCACCTGAATTTCATTTTGGTATGTTAGATTGGAAGCCAGAAAGGAGTGTATGGCCGACAAATCTCACTGAAATCCCTCGATATCCTGGAGGACTCAATTTGCAGCACAGTCCAGAATACTGGCTTACCTTCGATCTACTGTCTTCAAACATACCAGGCAGAAACTCTCCCTGCAGTGCCCGGAGAGTAGAAAATTCCAAAGAGGCCGATGTTTTCTTTGTGCCCTTTTTTTCTTCATTGAGTTATAACAGGCATTCAAAAGTTGAGACCCGTGGGCATAAGAGTAAAAATGAACTTCTGCAG

Fln Alignment:

sp_v1.1_unigene38129___FMYNLPPEFHFGMLDWKPERSVWPTNLTEIPRYP--GGLNLQHSPEYWLTFDLLSSNIPGRNSPCSARRVENSKEADVFFVPFFSSLSYNRHSK
A9NV69_______________YMYDLPRRFNLGMLKKNSSDLDLPWTSSKIPPWPQRSGLKKQHSIEYWMMVYLLGQHV-GEEGERTAVRVADPDQADVFYVPFFASLSFNTHGQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
175	66	33			1.0
176	33		66		1.0
177			83	16	0.994512
178	16			83	0.994512
215			50	50	1.0
218	50	50			1.0
261		60		40	1.0
293	50		50		1.0
307			75	25	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain