SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38112

Length: 879 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38112 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16 2.7.11.12)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein phosphatase	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	78%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 93 aas, your sequence is shorter than subject: 255 - 526

Fln protein: EFVKKRLCENLLKESLLSTDAVSA*SF*PSGLLMNSLHRNDDIDDSMSGTTAITVLVRGKTLYVANVGDSRAVVAQRRRGDNGVDALDLSCDQTPFREDEYKRVKLCGARVLSLDQLEGLKDPNVQSWGTEDDDEAGNHPRIWLPDANYPGTAFTRSIGDRTAESIGVIAVPEITVLDLTADQPFFVIASDGVFEFLSSQAVIDMVAKFKDPHDACAAIVAESYRLWLQNETRTDDITIIVVQINGLHDGDGRN*

Protein Length: 256

Fln nts: CGGAGTTCGTCAAGAAGAGGCTCTGTGAAAACCTTCTCAAAGAGTCGCTTTTATCCACGGACGCcGTCTCGGCATAATCATTCTAGCCTTCCGGGTTACTAATGAACAGTCTCCACAGGAATGATGATATCGACGATTCCATGAGTGGCACCACGGCTATTACCGTGCTtGTGAGAGGCAAAACTTTGTATGTTGCGAATGTAGGGGACTCTAGGGCTGTTGTTGCGCAGAGAAGAAGGGGAGATAACGGAGTCGACGCCCTGGATCTCTCCTGTGATCAGACTCCTTTTAGGGAGGATGAATATAAGCGCGTTAAGCTCTGTGGAGCTAGGGTTTTGAGTTTGGATCAGCTGGAGGGCCTCAAAGATCCCAATGTTCAGAGCTGGGGCACTGAAGAcGATGAcgAGGCCGGCaATCaTCCCAGGATCTGGCTGCCCGATGCAAATTACCCGGGGACTGCGTTTACCAGGAGTATTGGTGATCGTACTGCCGAAAGCATTGGTGTCATTGCTGTCCCGGAGATCACCGTGCTCGACCTCACGGCCGATCAGCCTTTCTTTGTCATTGCCAGCGATGGGGTTTTCGAATTTCTCTCCAGTCAAGCTGTCATAGATATGGTTGCAAAATTTAAGGATCCACATGATGCCTGTGCGGCAATTGTTGCAGAATCATATCGGTTATGGTTGCAGAATGAAACTCGTACTGATGACATTACAATTATTGTTGTGCAGATTAATGGCTTACATGATGGAGACGGAAGGAATTGATTGCATACTGCTATAAAAGGAGGGTTGGAAGGCTTGGTCTCCCAGGATGAAAACTTCCGTATTATGAAGCAAAATGACAAGGAAAAGTGAAGCTGACATCTTTTATTCAGAG

Fln Alignment:

sp_v1.1_unigene38112___LHRNDDIDDSMSGTTAITVLVRGKTLYVANVGDSRAVVAQRRRGDNGVDALDLSCDQTPFREDEYKRVKLCGARVLSLDQLEGLKDPNVQSWGTEDDDEAGNHPRIWLPDANYPGTAFTRSIGDRTAESIGVIAVPEITVLDLTADQPFFVIASDGVFEFLSSQAVIDMVAKFKDPHDACAAIVAESYRLWLQN--ETRTDDITIIVVQIN
B8LLH8_______________LRLHPTIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQ-DNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHD-----EPEVS--------------RVWLPHNDSPGLAMARAFGDFCLKDFGLIAVPDVSYRRLTERDEFIVLASDGVWDVLSNKEVVDIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAVVCLFLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain