SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38100

Length: 1475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38100

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid binding protein, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	amino acid binding	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid-binding ACT	IPR002912	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NND6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 38 aas, putative chimeric sequence, your sequence is shorter than subject: 411 - 466

Fln protein: NPPSVSIDNDTCPDYTVIKVDSRNKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGPKRVTSSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISVVLTIFGCNVVAAESWTHNMRVACVVYVTDELPNRPIEDEVRLSTIKERLSNVLKGNDNGTKGVKTDFSMGLTHRERRLHQLMFADRDYECFSDSSDPTLLDENKKPVITIEKCNEKGYSVVNIQCGDRPKLLCDTVCALTDMQYVVFHASITCNLPYALQEYYILH*HMDGCTLDTKDEKHRFVKCLEAAIERRASEGLSLELCASDRVGLLSDVTRMFRENGLLVTRADVTTRGDKAINVFYVRDAYSGNLAMNINMKVVEAMRREIGHTVFLQVKNMPGG*

Protein Length: 412

Fln nts: GAATCCTCCAAGTGTATCAATTGACAATGATACCTGCCCAGACTATACTGTGATTAAGGTGGATAGTAGGAACAAGCATGGTATACTTCTTGAAGTGGTCCAACTTTTGACTGATCTAGATCTAACCATTTCGAAAGCATATATTTCCTCAGATGGTGGATGGTTTATGGATGTGTTTCATGTGACAGACCAGCTAGGGGATAAACTTACAGATGAAAGCATCATTGAATACATACAGCAGTCCTTGGGACCAAAGCGTGTCACTTCCAGTAGAGAGGTGAAGACTTGTTTAGGTAGGATTGTAGGTGTACAATCCATTGGAGAATACACAGCAATAGAGTTGACTGGGACAGATCGCCCTGGTCTTCTTTCAGAAATTTCTGTAGTGCTTACAATCTTTGGTTGCAATGTAGTAGCAGCAGAATCTTGGACCCATAATATGAGAGTAGCATGTGTTGTATATGTAACTGATGAATTACCAAACCGGCCTATAGAGGATGAAGTTCGTCTGTCTACCATTAAGGAACGACTTTCAAACGTGCTTAAAGGGAATGACAATGGCACCAAAGGAGTCAAGACAGATTTTTCCATGGGCTTAACTCACCGAGAGAGGCGTCTGCACCAGCTGATGTTTGCTGACAGGGACTATGAGTGTTTTTCTGATTCCTCAGACCCCACTTTGTTGGATGAAAACAAGAAGCCTGTCATTACCATCGAGAAGTGCAATGAAAAAGGCTATTCTGTGGTTAATATCCAGTGTGGAGACAGGCCAAAGTTGCTGTGTGATACAGTCTGTGCTCTGACAGACATGCAGTATGTTGTCTTTCATGCTTCAATCACTTGCAATTTACCTTATGCATTGCAGGAATATTACATTTTACATTAGCATATGGATGGTTGTACCCTAGACACAAAAGATGAGAAACACAGATTTGTCAAGTGCCTGGAGGCTGCAATAGAACGCAGGGCATCTGAGGGCCTGAGTCTTGAGCTGTGTGCAAGCGATAGAGTAGGCCTTCTTTCGGATGTCACTCGCATGTTCCGTGAAAATGGTCTCTTAGTGACAAGAGCAGATGTGACAACCAGAGGGGATAAAGCGATCAATGTATTCTATGTCAGGGATGCTTATTCAGGAAATCTTGCCATGAATATCAATATGAAGGTAGTCGAAGCTATGAGGAGAGAAATTGGTCATACCGTGTTTCTGCAGGTTAAGAATATGCCAGGAGGATGA___GGAGGGCCGCGGATGGGAGTGAGGGAATCCCTTCTTTGCGGCAAGATGACGACTCAGGATTGTTAAGAGGCATGGTTAGGGTAACGACACACGGGAAGCAGGGAAACACTGCCATTTGCGCACCTTTTTAGAATGAAATTCAGATCTTGTAAAAATCTCTGCATTCATTCTATCTCCATGGTACATTTGTCCATTGATTGATCCAACAATGGAGATTATGGTAGTTCAGTAGAGGTAATAA

Fln Alignment:

sp_v1.1_unigene38100___NPPSVSIDNDTCPDYTVIKVDSRNKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGPKRVTSSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISVVLTIFGCNVVAAESWTHNMRVACVVYVTDELPNRPIEDEVRLSTIKERLSNVLKGNDNGTKGVKTDFSMGLTHRERRLHQLMFADRDYECFSDSSDPTLLDENKKPVITIEKCNEKGYSVVNIQCGDRPKLLCDTVCALTDMQYVVFHASITCNLPYALQEYYILH*HMDGCTLDTKDEKHRFVKCLEAAIERRASEGLSLELCASDRVGLLSDVTRMFRENGLLVTRADVTTRGDKAINVFYVRDAYSGNLAMNINMKVVEAMRREIGHTVFLQVKN
A9NND6_______________NPPSVSIDNDTCPDCTLIKVDSANKHGILLEVVQLLTDLDLTISKAYISSDGGWFMDVFHVTDQLGDKLTDESIIEYIQQSLGAKRVISSREVKTCLGRIVGVQSIGEYTAIELTGTDRPGLLSEISAVLTSFSCNVVAAESWTHNMRVACVVYVTDESSNRPIEDEVRLSTIKGQLSNVLKGNDDSTKGVKTDFSMGLTHRERRLHQLMFADRDYECSSDSSNPSLLDENMKPVITVENCNEKGYSVVNIQCRDRPKLLFDTVCTLTDMQYVVFHASITCNLPYALQEYYIR--HMDGCTLDTEGEKHRVIKCLEAAIGRRASEGLSLELSASDRIGLLSDVTRMFRENGLSVTRADVTTRGDKAINVFYVRDASSGNLAINIDMKVVEAMRREIGHTMFLQVKN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
419	83	16			0.994512
434	16	83			0.994512
482		75		25	0.996475
531			75	25	0.996473
545		75	25		0.996473
564	25		75		0.996473
636		33		66	0.997452
690	66			33	0.997452
691	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain