SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38092

Length: 643 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene38092

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lrr receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RBF5_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	lrr receptor protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	83%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	83%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	83%
Blast2go	Protein kinase-like domain	IPR011009	-	83%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
338			20	80	0.995493
341		20		80	0.995493
342		80		20	0.995493
343		80		20	0.995493
346	80	20			0.995493
349	80			20	0.995493
353			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain