SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38089

Length: 418 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene38089
CTTCCAGCTCTGCATCTGCCCCAATAATGGCTCCCACACTCGCTTCTGCCTCCACTTCCAGCTCTGCATCTGCCCCAATAATGGCTCCCACACTCGCTTCTGCCTCTACTTCCAGCTCTTCATCTGCCCCTAGCAATTACGGGTATGATGTTTTTATAAATCACAATGGCAAAGATGTTAAGAAAACGTTCGCCAGCCATCTATACCACCGTCTTTGCGATGGAGTGCGAGTATTTCTCGACAAGCCGGAAATGCAGCGCGGAGAAACGATAAACCCTCAAATAAAAGGAGCTATAGAAACCGCAACCGTCCAAGTCGCTATTTTCTCCCCTCGATACGCAAAGTCAAGTTGTTGTCTTGACGAACTCGTCCTTATGATGAAGTCCAGGGAGTCCGGTGCCGCCACCGTTATTCCTGT

Ace file of the UniGene sp_v1.1_unigene38089 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	3.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	tir-nbs-lrr resistance protein	-	-	6.42677e-24	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	6.42677e-24	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 130 - 565

Fln protein: MAPTLASASTSSSASAPIMAPTLASASTSSSSSAPSNYGYDVFINHNGKDVKKTFASHLYHRLCDGVRVFLDKPEMQRGETINPQIKGAIETATVQVAIFSPRYAKSSCCLDELVLMMKSRESGAATVIP

Protein Length: 131

Fln nts: CTTCCAGCTCTGCATCTGCCCCAATA_-_ATGGCTCCCACACTCGCTTCTGCCTCCACTTCCAGCTCTGCATCTGCCCCAATAATGGCTCCCACACTCGCTTCTGCCTCTACTTCCAGCTCTTCATCTGCCCCTAGCAATTACGGGTATGATGTTTTTATAAATCACAATGGCAAAGATGTTAAGAAAACGTTCGCCAGCCATCTATACCACCGTCTTTGCGATGGAGTGCGAGTATTTCTCGACAAGCCGGAAATGCAGCGCGGAGAAACGATAAACCCTCAAATAAAAGGAGCTATAGAAACCGCAACCGTCCAAGTCGCTATTTTCTCCCCTCGATACGCAAAGTCAAGTTGTTGTCTTGACGAACTCGTCCTTATGATGAAGTCCAGGGAGTCCGGTGCCGCCACCGTTATTCCTGT

Fln Alignment:

sp_v1.1_unigene38089___NYGYDVFINHNGKDVKKTFASHLYHRL-CDGVRVFLDKPEMQRGETINPQIKGAIETATVQVAIFSPRYAKSSCCLDELVLMMKSRESGAATVIP
B8LLN9_______________HYDYDVFINHRGPDVKNTFASDLYCRLRSHGMRVFLDKPEMKVGHKITPQILHAIETASIHIAIFSSTYAQSKWCLDELLHMLKSLKSNQGTIIP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
113	33			66	0.997452
143	33		66		0.997452
152		33		66	1.0
221	33		66		0.997452
257		33	66		0.998869
287			33	66	0.999998
299		33		66	0.997452
350	80			20	0.995493
363		25	75		0.996473
368		25	75		0.996473
382	25		75		0.996473
399	33		66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain