SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38068

Length: 1035 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38068 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AtRLP4; AtRLP4 (Receptor Like Protein 4); protein binding	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	protein	-	-	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLS6

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 274 - 552

Fln protein: MRKRLREPVPLLKNGEGNSQGWL*IDRSGVYLCVDDHLHSISQNAEPLAIRISCGSWKNTHTPETNMLWVKDYGYTGGSSANATTTSYIAPQLKKLRFFKLSDGPENCYNITRLRNGHYSVRMFFGLNEDVLADREPLFDVSIEGTQVYSLKPGWSTNDDQAYVEVSVFVLDTAATVCFHSTGHGDPSVMSIEILQLHPQAYDFGAQWGDTVIFRTAKRVDCGADQSVYGESYNADPWGGNRFWFSDTELDDVAKSSTRKLTTRNPIRGTSVAP

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTATTGCGTTTTTTAATGGGAACGGTGGCTACCGTCCCGTTTCTGGTAACATAGGAACTTCTTGGACTACTGTGGAGACCCGGAAGACGCCTCATGATTTGAGCCTGTGGAGATCATGGATATCGTCTTGGAGTTTTGCAGTTCTCATCGACGTAGCTCTCTGTTAAGGAACCATATCCGATC_-_ATGCGTAAGAGGCTTCGCGAACCAGTTCCGTTACTGAAAAATGGCGAAGGAAACAGTCAAGGTTGGCTTTAGATTGACCGCAGTGGCGTGTATTTGTGTGTGGACGATCATTTACACAGCATTTCACAGAATGCAGAGCCGTTGGCCATCCGGATCAGCTGCGGTTCATGGAAGAACACACATACCCCGGAGACGAATATGCTCTGGGTAAAAGACTACGGTTACACAGGCGGCTCGTCAGCAAACGCCACCACCACGAGCTACATTGCTCCTCAGCTCAAGAAACTCCGTTTCTTTAAGCTCTCTGACGGTCCCGAGAACTGCTACAACATCACTCGTCTACGGAATGGCCATTATTCGGTTAGAATGTTCTTTGGCCTCAACGAGGACGTTTTGGCAGACCGCGAGCCGCTTTTTGACGTCTCCATTGAAGGAACACAGGTCTATTCTTTAAAGCCGGGCTGGAGCACTAACGACGACCAGGCATATGTTGAAGTTTCAGTTTTTGTCTTGGACACTGCTGCCACTGTCTGCTTTCACAGCACCGGCCATGGTGATCCTTCGGTAATGAGTATCGAAATTCTTCAGCTTCATCCACAAGCTTATGATTTTGGGGCTCAGTGGGGAGATACTGTCATATTCAGGACTGCTAAGCGGGTGGATTGTGGAGCAGACCAGAGCGTGTACGGCGAGTCCTACAATGCCGACCCCTGGGGCGGCAACCGCTTTTGGTTTTCGGATACTGAGCTGGATGATGTGGCCAAGAGCTCGACTCGCAAGCTGACGACTCGGAATCCCATCCGAGGAACTTCTGTGGCCCCCAA

Fln Alignment:

sp_v1.1_unigene38068___KNGEGNSQGWL*IDRSGVYLCVDDHLHSISQNAEPLAIRISCGSWKNTHTPETNMLWVKDYXXXXXXXXXXXXXXYIAP---QLKKLRFFKLSDGPENCYNITRLRNGHYSVRMFFGLNEDVLADREPLFDVSIEGTQVYSLKPGWSTNDDQAYVEVSVFVLDTAATVCFHST-GHGDPSVMSIEILQLHPQAYDFGAQWGDTVIFRTAKRVDCGADQSVYGESYNADPWGGNRFWFSDTELDDVAKSSTRKLTTRNPIRGTS
B8LLS6_______________KIGHGKWGGWI------VPLGVLLRLFTVI-TAQPGFLSISCGG-KTDHTAENNITWVTDAGYIDVGQRADIDIGNVSALGSYLHSLRYFPKPLN-KSCYQLPVTPNAPYLLRLWFVAGNFSLVKGNLEFSFSIETVDILATREVFSVISEQIYYEFIFVTSGRVLYICLVRTFSSYDPFISAIELRRLQDGMYQNNIGEGGRILV-LQSRYDVGGNSVV---RYPQDKF--DRIW-----TPFKSSGPSRNVSSKEPISTTN

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
253	66		33		0.997452
274	75		25		0.996476
280			75	25	0.996476
313		75		25	0.996473
316	25		75		0.996473
318		75		25	0.996473
329	75		25		0.996473
367		80		20	0.995493
412	50		50		1.0
442	40		60		1.0
466		50	50		1.0
520	60	40			1.0
532	50		50		1.0
586	33			66	1.0
598			33	66	0.997452
607	33		66		0.997452
671	80		20		0.995493
692		80	20		0.995493
693		20		80	0.995493
698			50	50	1.0
699		25		75	0.996473
701	25			75	0.996473
702	25		75		0.996473
703			25	75	0.996473
705	75			25	0.996474
706	75	25			0.996474
709		25		75	0.996473
711	25	75			0.996473
712		25		75	0.996473
722	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain