SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene38043

Length: 968 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene38043 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GJS6_POPTR	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	f-box family protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	0.0	65%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 322 - 432

Fln protein: GESVENCGPQNDGKVSGLNDHSQVGGTNDRSQAGGTNDQSQDADYSYLPGLNDELALLCLAHTSRAEYGKLFSINTRYFALAKSGELYKIRRKEKIAEQWVYMLASGQYEWRAFDPLSGKWRRLPNLPSDTCFASSDKESLCAGTHLLVLGREIEGLVIWRYDLVTNEWYKGPSMLTPRCLYASASCGDFAFVAGGISANGDLLKYAERYDPTNQRWERLPDMNKKRKLCSGCYMDGKFYVIGGTGDNGDLTCGEVYDSDKRTWEIIENMKPSGPRDAVTQAPPLIAVANNELYALEASTNQLQVYIKKITDGRSLAKCLSE

Protein Length: 323

Fln nts: ATGGGGAGTCTGTGGAAAATTGTGGCCCTCAAAACGATGGTAAAGTTAGTGGCTTGAATGATCATTCTCAAGTTGGAGGCACAAATGATCGATCTCAGGCTGGAGGCACAAACGATCAATCTCAGGATGCAGATTACTCATATTTGCCTGGGCTCAATGACGAACTTGCTCTTCTTTGTCTTGCTCATACATCGAGAGCAGAGTACGGGAAACTTTTCTCTATTAACACAAGATACTTTGCCTTGGCTAAGAGTGGAGAGTTATATAAGATCAGGAGAAAAGAGAAAATAGCTGAGCAGTGGGTTTACATGCTTGCAAGTGGCCAGTATGAGTGGCGTGCATTTGATCCCCTTTCAGGGAAATGGAGAAGACTCCCAAATCTGCCATCTGATACGTGTTTTGCTTCAAGTGACAAGGAATCTCTTTGTGCTGGTACTCACCTCCTTGTCTTAGGTCGAGAGATTGAAGGGCTTGTGATCTGGAGGTATGATCTTGTAACCAACGAATGGTACAAAGGACCATCTATGCTCACTCCCAGATGTCTCTATGCGTCTGCGAGCTGTGGCGACTTTGCCTTTGTGGCTGGAGGAATCAGTGCAAATGGAGATCTTTTAAAATATGCAGAGAGGTACGATCCTACTAATCAGAGATGGGAACGGCTGCCTGATATGAATAAGAAGAGAAAACTCTGCTCTGGATGCTACATGGATGGTAAGTTCTATGTTATTGGAGGGACAGGAGATAATGGGGATCTCACCTGTGGTGAAGTCTATGATTCTGATAAGAGAACCTGGGAAATTATTGAAAACATGAAACCGTCTGGGCCTAGAGATGCAGTTACTCAGGCTCCACCTCTTATAGCTGTTGCAAACAACGAGCTCTATGCTCTGGAGGCCTCAACGAATCAGCTACAAGTTTACATTAAAAAAATTACAGATGGAAGGAGCTTGGCGAAGTGCCTGTCAGAG

Fln Alignment:

sp_v1.1_unigene38043___SQAGGTNDQSQDADYSYLPGLNDELALLCLAHTSRAEYGKLFSINTRYFALAKSGELYKIRRKEKIAEQWVYMLASGQYEWRAFDPLSGKWRRLPNLPSDTCFASSDKESLCAGTHLLVLGREIEGLVIWRYDLVTNEWYKGPSMLTPRCLYASASCGDFAFVAGGISANGDLLKYAERYDPTNQRWERLPDMNKKRKLCSGCYMDGKFYVIGG-TGDNGDLTCGEVYDSDKRTWEIIENMKPSGPRDAVTQAPPLIAVANNELYALEASTNQLQVYIKK
B8LQD3_______________NQGEGTHD-------SMIPGLHDDLGLDCLALTSRSDYGSLACLNKRFNYLVRSGYLYHLRRQLGIVEQWIYLMCN-LIGWEAFDPYRERWMRLHRIPSDECFNYADKESLAVGTELLVFGREVFGFAIWRYSLLTHSWARGPGMASPRCLFGSSSYGEIAIVAGGSDQNGTVLKSAELYNSELGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNR--ATHAPPLVAVVNNQLYAVEYSRNEVKKYNKE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
254		60	40		1.0
256			40	60	1.0
261			40	60	1.0
265	40			60	1.0
268	60		40		1.0
269			60	40	1.0
274		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
254		60	40		1.0
256			40	60	1.0
261			40	60	1.0
265	40			60	1.0
268	60		40		1.0
269			60	40	1.0
274		60	40		1.0

Position	A %	C %	G %	T %	Probability
254		60	40		1.0
256			40	60	1.0
261			40	60	1.0
265	40			60	1.0
268	60		40		1.0
269			60	40	1.0
274		60	40		1.0

Position	A %	C %	G %	T %	Probability
254		60	40		1.0
256			40	60	1.0
261			40	60	1.0
265	40			60	1.0
268	60		40		1.0
269			60	40	1.0
274		60	40		1.0